Ixodes scapularis (black-legged tick): 8041606
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Entry
8041606 CDS
T01131
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
isc
Ixodes scapularis (black-legged tick)
Pathway
isc03015
mRNA surveillance pathway
isc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
isc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8041606
09123 Folding, sorting and degradation
03018 RNA degradation
8041606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
isc03019
]
8041606
03041 Spliceosome [BR:
isc03041
]
8041606
Messenger RNA biogenesis [BR:
isc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
8041606
mRNA cycle factors
Stress granule specific factors
8041606
Spliceosome [BR:
isc03041
]
Complex C
Other components
Complex C specific factors
8041606
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_5
RRM_7
RBD_RDR6
Beta-barrel_ALG44
Motif
Other DBs
NCBI-GeneID:
8041606
NCBI-ProteinID:
XP_002414860
UniProt:
B7QI53
LinkDB
All DBs
Position
Unknown
AA seq
686 aa
AA seq
DB search
MNPSGPNYPMASLYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDAIKNKPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFS
AFGNILSCRVATDEEAASKGYGFVHFETEEAANKAISKVNGMLLNNKKVYVGKFIPRKER
EKMLGDKARCFTNVYIKNFGDELDDDKLLVIFEKYGKITSAKVMTDDSGKNRGFGFVSFE
EPDSAERAVEELNGKDMGGRPLYVGRAQKKAERQSELKRHFEQLKQERLNRYQGVNLYVK
NLDDALDDERLRKEFGPFGNITSAKVMTDANGRSKGFGFVCFSSPEEATKAVTEMNGRIV
VSKPLYVALAQRKEDRKAHLASQYMHRIAGMRMQMGQMFPPGGTGVANYFVPTMPHHQTG
QRSYFPAALGPAQMRATPRWTGQQPQLRGAGPQGAGAGAQPQGAGFPTAMPYQRQPRPSL
AAQPQRGSLGAARPITGGQQAPPQQQQGAGGPQQAPPRVMGPRPTGMASQAAAGPRPTYK
YTQAMRNPPQVTAVSAPVAAPFQVAAQQQQQQHQVAAAQAAAQQQASQQAAVHIQGQEPL
TASMLAEATPHDQKQMLGERLFPLIHRMYPDLAGKITGMLLEIDNSELLHMLEHHESLKA
KVEEAVAVLQAHQAKETVVVGSLKKE
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcggccccaactacccgatggcttccctgtacgtcggagacctgcatccg
gaggtcaccgaggcaatgctgttcgaaaaattctcgacggccggacccgttctctcgatc
cgggtctgcagggacatgatcactcgccgatccctgggctacgcctacgttaacttccag
cagccggcagacgctgaacgtgccctggacacgatgaacttcgatgccatcaagaacaag
ccgatccgcatcatgtggtcccagcgggacccgtcgctgcgcaaatccggcgtgggcaac
gtgttcatcaagaacctggacaagaccatcgacaacaaggcaatgtacgacacgttctcg
gccttcggcaacatcttgtcgtgtcgcgtggcgactgacgaggaggcggcgtccaagggc
tacggcttcgtgcacttcgagactgaggaggcggccaacaaggccatcagcaaggtgaac
ggcatgctgctcaacaacaagaaggtgtacgtgggcaagttcatccctcgcaaggagcgc
gagaagatgctgggcgacaaggcgcgctgcttcaccaatgtctacatcaagaactttggt
gacgagcttgacgacgacaagctgctggtgatcttcgagaagtatggcaagatcacgagc
gccaaggttatgactgacgacagtggcaagaaccgcggcttcgggttcgtctcgttcgag
gagcccgacagcgccgaacgggccgtggaggagctcaacggcaaggacatgggaggccgg
ccactgtacgtggggcgcgcccagaagaaggcggagcggcagtcggagctgaagcggcac
tttgagcagctcaagcaagagcgcctgaaccgctaccagggggtcaacctctacgtcaag
aacctggacgacgccctggacgacgaacggctccgcaaggagttcgggcccttcggcaac
atcacgagcgccaaggtgatgacagacgccaacggccggtccaagggcttcggcttcgtc
tgcttcagctcccccgaggaggcgaccaaggcggtgactgagatgaatggccgcatcgtg
gtgtccaagccgctctacgtggcgctggcccagcgcaaggaggaccgcaaggcccacctg
gcgtcgcagtacatgcaccgcatcgcgggcatgcgcatgcagatgggacagatgttcccg
ccgggcggcaccggtgtggccaactacttcgtgcccaccatgccccaccaccagacgggc
cagcgcagctacttcccggccgcgctcggacccgcccagatgcgagccaccccccgctgg
acaggccagcagccccagctgcggggagcgggcccgcagggggcgggtgcgggggcccaa
ccccagggggcgggcttcccgacggccatgccctaccagcggcagccgcgcccgtccctg
gccgcgcagccccagaggggctccttgggggcagcgaggcccatcacggggggacagcag
gccccaccccagcagcagcagggggccgggggaccacaacaggcgccgccgagggtgatg
ggtccaaggccgacgggaatggcatcccaggcggctgcggggccccgcccaacctacaag
tacacccaggccatgcggaacccgccccaggtgacggccgtgtctgcgccggtggccgca
cctttccaggttgcggcccagcagcagcaacagcagcaccaggtggcggcggcccaggcg
gcggcccaacagcaggcctcccagcaggcggcggtgcacatccagggccaggagcccctg
acggcctcaatgctcgccgaggccaccccccacgaccagaagcagatgctcggggagcgg
ctgttccccctcatccaccgcatgtacccagacctggccggcaagatcaccggcatgctg
ctggaaatcgacaactcggaactgctccacatgctcgagcaccacgagtcgctcaaggct
aaggtggaggaagcagtggcggtgctgcaagcccaccaggccaaggagacggtggtggtg
ggctcgctcaagaaggagtga
DBGET
integrated database retrieval system
