Ixodes scapularis (black-legged tick): 8041873
Help
Entry
8041873 CDS
T01131
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
isc
Ixodes scapularis (black-legged tick)
Pathway
isc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
isc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8041873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
isc03019
]
8041873
03041 Spliceosome [BR:
isc03041
]
8041873
Messenger RNA biogenesis [BR:
isc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
8041873
Spliceosome [BR:
isc03041
]
Complex B
Other components
Prp19-related factors
8041873
Complex C
8041873
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
Mad3_BUB1_I
TPR_15
DHR-2_Lobe_A
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
8041873
NCBI-ProteinID:
XP_002415091
UniProt:
B7QIT4
LinkDB
All DBs
Position
Unknown
AA seq
850 aa
AA seq
DB search
MKSTLDIRFEEDDLPYEEEIIRNPFSVKHWMRYIDFKKDKSKDVINLICERALKELPGSY
KLWYSYLKLRRQQVRDLCITDPEYEDVNSAFERSLVFMHKMPRIWMDYCKFLTQQQKITR
TRRVFDRALRALPITQHHRIWPLYLEFVNMHDIPETALRVYRRYLKLCPENAEEFVEYLK
RIGRLDDAAVRLADIVNKEDFVSKEGKSKHQLWNELCELISKNPEKVHSLKVDAIIRGGL
RRYTDQIGQLWNSLADYYIRAALFERARDIYEEAIQTVLTVRDFTQVFDAYAQFEESVLC
AKMEEASAARPSEENDLDLEIRLARFEDLMDRRPLLLNSVLLRQNPHNVHEWLKRVKLFE
GKPREIINTFTEAVQTIDPKLATGKLNILWVSFAKFYEENDQIEDARIIFEKATQVPFTK
VEDLAHVWCEWSEMELRHENHEGALKLMQRATAMPSRKVAYHDQNEPVQFRVYKSLKVWS
LYADLEESFGTFKSTKAVYDRIIDLKIATPQIIINYGLFLEENNYFEEAFKAYEKGVALF
KWPNVYDIWNTYLTKFLKRYGGTKLERARDLFEQCLESCPAKFAKSLYLLYAKLEEEHGL
ARHAMAIYDRGCKAVLPEEQFQMFNVYILKAAEIYGLTHTREIYERAIEVLPDNQARQMC
VRFADLERKLGEIDRARAIYAHCSQICDPRVTADFWNTWKDFEVHHGNEDTMREMLRIKR
SVQATYNTQVNFMTAQMLSATAREVAATGATEEPAKDSMQQLEAAAKVLAEEARRDPARM
PGKDILFVRGGTTEDEQSLAERSRTTNPDEINIDDDEGSDDDEQVEEVAVEQRSVPEEVF
GDLKMSTDNP
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgaagagtacactggacatacgattcgaggaagatgacctgccgtacgaagaagaaatc
attagaaatcccttctccgtcaagcactggatgagatacatcgacttcaagaaggacaag
tcgaaagatgtcatcaacttgatctgcgagcgagcactgaaggagcttcccggaagttac
aagctctggtacagctacctaaagctacgtcgacagcaagtcagggatctctgcattact
gatcccgagtacgaagatgtcaacagcgcattcgagaggtcactggtgttcatgcacaaa
atgccacggatctggatggactactgcaagttcctcacgcaacagcaaaagatcactcgc
acccggcgagtctttgacagagctctgcgagcgttgcccatcactcagcaccaccgcatc
tggcccctgtacctggaattcgtcaacatgcacgacataccagagactgctcttcgtgtg
taccggcggtatctcaagctttgccctgagaacgccgaggaattcgtggagtacctcaag
cgcatcggcaggctagacgacgccgcagtcagactcgccgacatcgtgaacaaggaagac
tttgtgtccaaggaagggaaatcaaagcaccagctgtggaacgagttgtgcgagctcatc
tccaagaacccggagaaggttcactccctcaaagtggatgccatcatcaggggcgggctg
cgccgctacactgaccagatcggtcagctctggaactccctggccgactactacatccgt
gccgctctctttgagagggcgagggacatctacgaagaagccatccagactgttctgact
gttagagatttcacgcaagttttcgacgcctatgcccaatttgaagagagcgtgctgtgt
gcaaagatggaagaggcgagtgcagcaagaccgagcgaagaaaatgacttggacctagag
atacggcttgcaaggtttgaagacctcatggataggagacctctgctgctgaacagtgtc
ctactcagacaaaacccccacaatgtccacgaatggctgaaacgagtgaagctgtttgaa
gggaagccacgagagataataaacaccttcacggaagccgtgcagactatagaccccaag
ctggccacgggcaagctcaacattctctgggtgtcctttgcaaagttctacgaggaaaac
gaccaaattgaagacgcccgtatcatcttcgagaaggcaacccaagtccccttcacaaaa
gtcgaggacctcgctcacgtttggtgcgagtggtccgaaatggagctgaggcacgaaaac
cacgaaggggccctgaagctcatgcagagagctacagccatgccttccaggaaagtggcc
tatcacgaccagaacgagccggttcagttccgagtgtacaagtctctcaaggtctggtcg
ctgtacgcggatctagaagaaagctttggcacattcaagtcaacaaaggcagtttacgac
cgcatcatcgacctaaagatcgccactccgcagatcatcatcaattatggacttttcttg
gaagagaacaactacttcgaagaagccttcaaagcctacgagaagggcgttgccctcttc
aagtggccaaacgtgtacgacatttggaacacctacctcacaaagttcctcaagcgttac
ggtggtaccaagctggaaagagctcgtgacctttttgagcagtgtctggagagctgccca
gccaagtttgcaaagtccctgtacctgctgtatgccaagctggaggaagaacacggcctg
gccaggcatgccatggccatctacgaccgtggttgcaaggcagtgctgcccgaagaacag
ttccagatgttcaacgtgtacatcctgaaggcggcggagatctacgggctgacgcacact
cgagagatctacgagcgggccattgaggtgttgccggacaaccaagctcggcagatgtgt
gtgcgcttcgccgacctggagcggaagctgggcgagatcgaccgtgccagggccatctac
gcgcactgcagccagatatgcgaccccagagttacggcagacttctggaacacgtggaag
gattttgaggtgcaccacggaaacgaggacacaatgcgagagatgttgcgcatcaagcgt
agcgtccaggccacctacaacacccaggtcaacttcatgaccgcccagatgctcagtgcc
accgccagggaagtggccgccaccggggccacagaagagcctgccaaggactccatgcaa
cagctggaagcagcggccaaagttttggccgaggaagccaggagagatcccgcgaggatg
ccaggaaaagacatcctgttcgtcaggggtggtacgacggaggatgagcagagcctagcg
gagcgaagcagaacgaccaacccagacgaaatcaacattgatgacgacgaaggttccgac
gacgatgaacaggttgaagaggtggcggtcgagcagcgttcagtgcccgaagaggtgttt
ggagacctcaagatgtctacggataatccatga
DBGET
integrated database retrieval system
