KEGG   Ixodes scapularis (black-legged tick): 8042067
Entry
8042067           CDS       T01131                                 
Name
(RefSeq) replication factor C subunit 5 isoform X1
  KO
K10756  replication factor C subunit 3/5
Organism
isc  Ixodes scapularis (black-legged tick)
Pathway
isc03030  DNA replication
isc03410  Base excision repair
isc03420  Nucleotide excision repair
isc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:isc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    8042067
   03410 Base excision repair
    8042067
   03420 Nucleotide excision repair
    8042067
   03430 Mismatch repair
    8042067
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:isc03032]
    8042067
   03036 Chromosome and associated proteins [BR:isc03036]
    8042067
   03400 DNA repair and recombination proteins [BR:isc03400]
    8042067
DNA replication proteins [BR:isc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    8042067
  DNA Replication Termination Factors
   ELG1-RFC complex
    8042067
Chromosome and associated proteins [BR:isc03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    8042067
DNA repair and recombination proteins [BR:isc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     8042067
  Check point factors
   HRAD17(Rad24)-RFC complex
    8042067
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_assoc_2 AAA_11 RuvB_N AAA_24 AAA_lid_RFC1 AAA_14 AAA_16 DUF815 DEAD RCF1-5-like_lid AAA_5 AAA_30 AAA_7 nSTAND_NTPase5 DNAX_ATPase_lid Terminase_6C AAA_28
Other DBs
NCBI-GeneID: 8042067
NCBI-ProteinID: XP_002415236
LinkDB
Position
Unknown
AA seq 328 aa
MGEKGETRTNLPWVEKYRPNKLDDLIAHEDIISTINRFINEDRLPHLLFYGPPGTGKTST
ILACARQIYGPKEFGSMVLELNASDDRGIGIVRGEILNFASTKTIFKSGFKLIILDEADA
MTNDAQNALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSLSQMSPRIEHV
IEQERLTVTEDGKKALMDLAQGDMRKALNILQSTSMAFEEVTENNVYQCVGHPLKSDISN
MVTTLLNEDFAFSYDQINKVKVNKGLALQDVLTQIHLYVHRIEFPNEVKMYLIDKMAEIE
NRLAAGTSEKIQLSSLIAAFQTARQMVA
NT seq 987 nt   +upstreamnt  +downstreamnt
atgggagagaaaggagaaaccagaaccaacttaccatgggtcgaaaagtacaggccgaac
aagctcgacgacctcattgcacacgaagacattatcagcacgatcaacagattcattaat
gaagacagactgcctcacttgttgttctatggaccaccaggcactgggaaaacgtcaacc
attttggcatgcgcgcgacaaatttacggtccaaaagagtttggctcaatggttctggag
ctgaacgcttcggacgacagaggaatcggcattgtcagaggagagatactcaactttgcc
agcacaaaaacaatattcaagtccggtttcaagctgatcatccttgatgaggccgacgcc
atgacaaatgatgcacagaatgctctccgaagagtgattgagaagttcacagagaatgct
cggttctgcctcatctgcaactacctgtccaagatcatccctgcactgcaatcgcgctgc
actcgcttccgctttgggcccctctccttgagccagatgagcccccggatagagcacgtc
attgagcaagaacgcctgactgttaccgaggatggaaagaaggcactgatggacttggct
caaggggacatgaggaaggcactcaacatcttacagagcacgagcatggcatttgaagag
gtcaccgagaacaatgtgtaccagtgcgtgggccaccctctcaagtcggacatctccaac
atggtgaccactctgttaaatgaggactttgccttctcctacgatcagatcaacaaagtg
aaggtgaacaaaggactcgcgctccaggatgtcctcacccaaattcacctttatgttcac
agaatcgagtttcccaacgaggtgaagatgtatctcatcgacaagatggctgaaattgag
aataggcttgctgctggaacaagtgagaagatacaacttagctccctcatcgcggccttc
cagaccgccagacagatggtggcatag

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