Ixodes scapularis (black-legged tick): 8044019
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Entry
8044019 CDS
T01131
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
isc
Ixodes scapularis (black-legged tick)
Pathway
isc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
isc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8044019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
isc03021
]
8044019
03019 Messenger RNA biogenesis [BR:
isc03019
]
8044019
Transcription machinery [BR:
isc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
8044019
Messenger RNA biogenesis [BR:
isc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
8044019
U7-dependent histone pre-mRNA processing factors
8044019
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
DUF7879
Motif
Other DBs
NCBI-GeneID:
8044019
NCBI-ProteinID:
XP_029849655
LinkDB
All DBs
Position
Unknown
AA seq
1194 aa
AA seq
DB search
MASRKKAVDSRRSTAAQFFMDEEQQLADQKSTHDRVVELINQAAVLQNLKDHQKVTNLRQ
VQELIVFKEPNLLDNFLDEMLAFQNDRSQEIRKFVVGFIEEACKKDPDVFPKVLANLRMM
FRDEAVAVQKRVIQAATQLYRVALRWICQSRGVDDLMETSWEYVRNLKDDVVALLDSEND
GVRTHTIKFMEMLVILQTYPDGDSPNKSENDFALDDVPLSLKFIKPRKLEEEAKKVFDAL
VVFHGTSHISSINLMACMQTLVNIAKHRAEFMSRVIQALESLHANLPPTLAKSQVSSVRK
HLKLQLLILMKHPAAVDFHGQISTLLTDLGATPQEIAKCMPKPEELKKRARLIEESTSVA
SGAAPPSVKRIKLETEEEEEEEEEEEKEEGDDSAISKAATNTAIDITAQDLVSRLTTVNV
TDIVLVSMLSLPETMPAHFQASYTPIAVAGTETQIKHLARLISTQMTAAGLGKGVEEMMV
KAKEQQEEEKKVEETSQPKQTIQTLLGGTTDTGKKKEAKNTVLIPTGFEQSNKGRRFRQL
NLADITRPLNEDETAQMLVSAVRRILKAGRAHSSGISPVQVKILAGLATQFGGEISAMLK
DYILEDLRLHADIALAWLYEEYAQLQGFQQGGAAPPMDKLAGSESYVHCLNGLLKDVLHK
CEPRERDALFGRFFLEIPSITSDALIILKQYCQNESTVSNGLAILRALVDYRPPGQMEYL
QKLLELTVAQNQEVRLQSAKHAKQLHERGNFRPIIEDFALMYLRFLLEPVPPQHLFHNSL
AWSEDHTKICMQLYISLLPVNHKLIHELAVVYVGAIAEIKRTILRGLEGPVKGMGMSSPE
LLLLVENCPKGAETLVTRIIHILTDKTPPSAELVARVRDLYHKRVSDVRFLIPVLNGLSK
KEVIAALPKLIKLNPIVVKEVFNRLLGSHVESTANFTSPVTPAELLVALHNIDPSKCDVK
TVIKATSLCFAEKHVYTQEVLAVVMQQLMEQSPLPTLLMRTVIQSLSLYPRLILFVINIL
QRLIQKQVWKQKKVWEGFIKCCQRTKPQSLQVLLQLPAEQLQNVFQVSPDLQQPLVQHVS
AFTDHQKAHIPNSILELLHLGGRPDAEGDAVKSKSLDKDAKETSKPLTIHIRRDSSRDSR
ESRDYSREYGRDHSREHSRDHSRDHSREHSRDRSLNSSNIKVATEEVSPEGPET
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaagaaagaaagccgtggacagtcgacgtagtacggctgcccaatttttcatg
gatgaagagcagcagctagcggaccaaaaatcaactcatgatcgggtggtggagctcatc
aaccaggcagccgtgctccagaatttgaaggatcaccagaaggtgacaaacctccgccaa
gtccaggagctgattgtcttcaaggaacccaacctcctcgacaactttctcgatgaaatg
ctggcatttcagaatgaccggtcgcaggagattcgcaagtttgtggtgggatttatcgag
gaagcctgcaagaaggacccggacgtgttccccaaggtgctggcgaacctgcgcatgatg
ttccgggacgaggcggttgcggtgcagaagcgggtgatccaggcagcgacgcagctgtac
cgggtggccctgcgctggatctgccagtcccggggggtcgacgacctcatggagacctcc
tgggagtatgtgcgcaacctcaaggacgacgtcgtggccctgctcgactcggagaacgac
ggggttcgcactcacacgatcaagtttatggagatgctggtgatactccagacctacccg
gacggagacagccccaacaagtctgagaacgactttgcgctggacgacgtcccgctgtcg
ctgaagttcatcaagccacggaagttggaggaagaggccaagaaagtttttgatgcgctc
gtcgtgttccacggcacgtcacacatctcgagcatcaacctgatggcctgcatgcagacg
cttgtgaacattgccaaacacagagcagagttcatgtctagggtcatccaagcactggag
tcgcttcacgccaacctacctccgaccctggcaaagtctcaagtgagcagcgtgcgaaag
cacctgaagctgcaactgctcatcctgatgaagcaccctgctgctgtcgacttccacgga
caaatcagcacgctcctcactgatctgggagccacccctcaggagattgccaagtgcatg
cccaagccggaggagctgaagaagcgggcgcggctcatcgaggagagcaccagtgtggcc
agcggcgccgcaccgcctagtgtaaagcgaatcaagctggagactgaggaggaggaagaa
gaggaggaggaggaagagaaggaggaaggggacgacagcgccatttccaaggcagccact
aacacagccatcgacatcacggcccaagacctcgtctcgaggctcaccactgtgaacgtc
acggacattgttctagtcagcatgctctcgctgcctgagacgatgcccgcccactttcaa
gcatcgtacactccgatcgctgtggccggcaccgagacccagatcaagcacttggctagg
ctcatctcgacccaaatgaccgctgccgggcttggcaagggcgtcgaagagatgatggtc
aaggccaaggaacaacaagaagaggagaagaaagtcgaagagacttctcagccaaagcag
acaatccagactttgctcggcggtacaactgacaccggtaagaaaaaagaggccaagaac
accgtcttgatcccgacgggcttcgagcaaagcaacaagggacgtcgatttcggcaactc
aacttggcggacatcacgcggccacttaacgaggatgagaccgcgcagatgctcgtttct
gccgtccgtcgaatcctcaaggcggggcgggctcattcctcgggcatctcaccggttcaa
gtcaagattcttgcaggactggcgacgcaatttggaggcgagatcagtgccatgctgaag
gactacatcctggaggacctgcgcctgcatgcggacattgccctggcctggctgtacgag
gagtacgcccagctgcagggctttcagcagggtggtgccgcgccgcccatggataagctg
gccggcagcgagtcgtacgttcactgcctcaacggcctgctgaaggacgtgctgcacaag
tgcgagccgagggagcgggacgcattgtttggaaggttcttcttggagatcccttcgatc
acttcggatgccctcatcattctcaagcagtactgccaaaacgagtccacggtttccaac
ggcctggcgatcctgcgagccctggtggactaccgacccccgggccagatggagtacctg
cagaagctgctggagctcactgtggcgcagaaccaggaggtgcgcctccagtcggccaag
cacgccaagcagctgcacgagcggggcaacttccggcccatcatcgaggactttgccctg
atgtacctccgtttcctgttggagccggtacctccgcagcacttgtttcataacagtttg
gcgtggtcagaggaccataccaagatttgcatgcagctgtacatatcactcctgcccgtc
aaccacaagctcattcacgaactggccgtggtctacgttggggccatcgcggagatcaag
cggaccattctacgggggctggaaggaccggtgaagggaatgggcatgtcgtcccccgaa
cttctgctgctggtcgaaaactgccccaagggagcagagacgctcgtcacacggatcatc
cacatcctcaccgacaagacgcctccttcggcggagctggtggcccgggtgcgagacctg
taccacaagcgcgtctcggacgtgcgcttcctcattccggtgctcaacgggctgtcaaag
aaagaggtgatagccgcccttcccaaactcatcaagctgaatcccattgtggtcaaggag
gtgttcaatcgtctgttgggcagccacgtcgaatccacggccaacttcacaagccccgtg
acgccggcggagctgttggtggccctgcacaatatcgacccttccaagtgcgatgtcaag
accgtcatcaaagcgacgtcgctgtgctttgcggagaagcacgtgtacacccaggaagtg
ctggcagtggtgatgcagcagctgatggagcagagccccctgcccaccctgctcatgcgc
acggtcattcagtccctcagcctctacccacgcctcatcctctttgtcatcaacatcctg
cagcgcctcatccagaagcaggtctggaagcagaagaaggtgtgggagggcttcatcaag
tgctgccagcgcaccaagccccagtcgctgcaggtgctgcttcagctgcctgccgagcag
ctgcagaacgtcttccaggtcagccccgacctgcagcagcccctggtgcagcacgtttcc
gccttcacggaccatcagaaggcccacataccaaactccatcctcgagctcctgcatctg
ggcggcaggccggacgccgagggcgacgccgtgaagtctaaatctttggacaaagatgcc
aaagaaactagcaagcctctcaccattcacatccgaagggatagctctagggattctagg
gagtctagggactacagcagggagtacggcagggatcacagtcgagagcacagcagggac
cacagcagggaccacagcagagagcacagcagagaccggtctttgaacagcagcaacatc
aaggtggcgacggaggaagtctcgccggaggggccagagacctag
DBGET
integrated database retrieval system
