Ichthyobacterium seriolicida: JBKA6_0178
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Entry
JBKA6_0178 CDS
T05228
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ise
Ichthyobacterium seriolicida
Pathway
ise03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ise00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JBKA6_0178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ise03019
]
JBKA6_0178
03009 Ribosome biogenesis [BR:
ise03009
]
JBKA6_0178
Enzymes [BR:
ise01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JBKA6_0178
Messenger RNA biogenesis [BR:
ise03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JBKA6_0178
Ribosome biogenesis [BR:
ise03009
]
Prokaryotic type
rRNA helicases
JBKA6_0178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAV94191
UniProt:
A0A1J1DWE7
LinkDB
All DBs
Position
236921..238651
Genome browser
AA seq
576 aa
AA seq
DB search
MNKFKELGINDELARAIEDLGFETPSEVQEKSIPILIEKDVDIVSLAQTGTGKTAAFGLP
LIQKLDISKKETQALILSPTRELCLQISEELKKYSKYIKGIRVVSIYGGANINEQAKDIK
RGAHIIVATPGRMLDMVKRKYLDISKIRYNVLDEADEMLNMGFKEDIDSILSETPKDKCT
WLFSATMPREVARIAANYMSSPIEITVGSKNQGAKNISHQYYMVSSSNKYLALKRIVDFY
PDIFGLIFCRTKAETQIITERLIQDGYNVSSLHGDLTQNQRDAVMKTFRSKQIQILVATD
VAARGIDVDDISHVINYQLPDEPEVYTHRSGRTARAGRNGLSISIITSKDKHKIKTIERI
AKSTFEQLQVPKGEEICEKQLFSIVKKVHDTEVQEEQIAKFLPKIEKELEHMSKEDIIKK
FVSMEFNIFLKYYKNTRDLNDYADEHSSGTKRIFINIGEKDGFQWDSLKDFLKENLELFN
NEISGVDVKEKFSFFNIVDDKSEYVIERLNGLDINGRSLSAEISLKRKGFGPSGGRGRSF
NSRNRGFDSGNRRNDDYKRPRSGGGGFKSRYNRNRD
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgaataaattcaaagaattaggaattaatgacgagctggctagagctattgaagatctg
ggatttgaaactccctcggaagtacaagaaaaaagtatccctatactcatagaaaaagat
gtggatatagttagtttagctcagacaggtactgggaaaactgcagcttttggattgcct
ttaattcaaaaattagacatttctaaaaaagaaactcaagctttgattctctctccaact
agagaactatgtcttcagataagtgaagaattaaaaaaatattcaaaatatataaaaggc
attcgcgtggtgtctatttacggaggagctaatataaacgaacaagccaaagacataaag
agaggagctcacataatagtagctacaccagggcgtatgttagatatggtaaagagaaaa
tatctcgatataagcaaaatcagatataatgtattagatgaagccgatgaaatgttaaac
atgggctttaaagaagatatagatagtatactatctgaaactccaaaagacaaatgtact
tggctgttctctgcaacaatgcctagagaggtagctagaatagctgcaaattatatgtct
tcacctatagagattactgtaggaagtaaaaatcaaggtgctaaaaacatatcgcatcag
tactatatggtgtcttccagtaataaatatctagctctcaagaggatagtagatttttac
ccagatattttcggattgatattttgcaggacaaaagctgaaactcaaatcataacagaa
cgtctcatacaagacggttataatgtatcttctcttcacggtgatttaactcaaaatcag
agagatgctgtgatgaagacttttagaagcaaacaaatacaaatattagtagcaacggat
gtggctgctagaggtatagacgtagatgatatcagtcatgttataaattatcagttgccc
gacgaaccagaggtttatactcatcgttctggaaggacagcgcgtgcagggcgtaatggc
ttgtctatttccataattacatcaaaagacaagcataaaatcaagactatagagcgtatt
gcaaaatctacctttgaacaattacaagttccaaaaggggaagagatatgcgagaaacag
ctctttagcatagtaaaaaaggtacacgatacagaagttcaagaagaacaaatagctaaa
tttctacctaaaattgaaaaggagttagaacatatgtccaaagaggatataataaagaaa
tttgtctccatggagtttaatatttttctaaagtactataaaaacactcgagatttaaac
gattatgctgacgaacatagcagtggaactaaaaggatatttatcaacattggtgaaaaa
gatgggtttcaatgggatagcttaaaagatttcttaaaagaaaatctagaattattcaac
aatgagattagcggtgtagatgtaaaagaaaaattttcatttttcaacattgtagacgat
aaatccgaatacgtcatagaaaggttaaatggattagatataaatggaagaagcttatca
gctgagatctctttaaagaggaagggttttggtccttcaggtggaagaggcagaagcttc
aattctagaaatagaggctttgattcagggaatagacgaaatgatgattataaaagacct
agaagcggcggcggcggcttcaaaagtagatataacagaaatagagattga
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