Ichthyobacterium seriolicida: JBKA6_0301
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Entry
JBKA6_0301 CDS
T05228
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ise
Ichthyobacterium seriolicida
Pathway
ise03410
Base excision repair
ise03430
Mismatch repair
ise03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ise00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JBKA6_0301
03430 Mismatch repair
JBKA6_0301
03440 Homologous recombination
JBKA6_0301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ise03400
]
JBKA6_0301
DNA repair and recombination proteins [BR:
ise03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JBKA6_0301
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JBKA6_0301
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JBKA6_0301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BAV94314
UniProt:
A0A1J1DWT4
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All DBs
Position
402634..404334
Genome browser
AA seq
566 aa
AA seq
DB search
MEKPKTKWIFKPDPPIDKITRLSKELNIDTVISKLLIQRGIETFDQAKVFFCPDISHLHS
PFLMKNMKDAIDRINSAIDSSQRILIYGDYDVDGTSAVALTYSFLKQFTDEIEFYIPDRD
SEGYGISYKGIDYAKSKNIELIIALDCGIKENNKIEYAKEKNIDFIICDHHTPSDKLPDA
IILNPKQKDCNYPYKELSGCAIGFKLIQGINQDKGFDFEQLTNYLDLVAVSIISDIVSMS
GENRVLTFLGLKQLNKNPRLGFRYFIKLFNKTEVTVEDVVFGIAPKINAAGRIDHGSVAV
ELMLSKDEDQVKTLIEIIEEFNAYRKELEKTTAKQALEMVEPQRKTTVVYSPSWHKGVIG
IVASRIIEHHYRPTIVFTKKDDLLVASARSIEGIDIYEALCQCQEHIEQFGGHKQAAGLS
IKENNLEGFKSKFERVIENMTSEKDFIQTTIIDSEIQLEDITPKFWRILKRFEPCGPDNR
HPVLAYKNIKYDDSARLVGEDKSHLKLNISSPNSEKRYNAIAFKKAYFLPEIESRGEYSI
AFSLKENNWMNMISIDFHIKDIHFDI
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacctaaaacaaaatggattttcaaacccgatcctccaatagacaaaatcacg
agattatccaaagaattaaatatagacacagttataagtaaactcctgatacagagagga
atagaaacttttgatcaagctaaagtttttttctgtcctgatatttcacatctgcactcc
ccttttttaatgaaaaatatgaaggacgctatagacaggataaatagtgctatcgattct
tctcaaagaatcttaatatacggtgattacgatgtagatggcacctccgcagtagccttg
acatatagttttttaaagcaatttacagatgaaatagaattttatatacccgatagagac
agtgaaggatatgggatatcatataaaggcatagattatgcaaaaagtaaaaatatcgaa
cttataatagctctagattgtggtataaaagagaataataaaattgaatatgctaaagaa
aaaaatatagattttataatctgcgatcatcatactcctagtgataagttgcccgatgct
ataatattaaatcctaaacaaaaagattgcaattatccctataaagaactcagtggttgt
gctataggtttcaagttgatacaaggcataaaccaagacaaggggtttgattttgaacaa
ttgaccaattatttagatttggtagcagttagtataatttcagatattgtatctatgtct
ggagaaaatagagtcttaacttttttagggttaaaacaactaaacaaaaatccccgttta
ggatttcgttattttataaaattatttaataaaacagaggtcactgtagaagatgtagtc
tttggcatagccccaaaaataaatgccgctggaagaatagatcacggatctgtagctgtt
gaattaatgctatccaaggatgaagatcaagtcaaaacccttatagaaattatagaagaa
tttaatgcatacagaaaggaattagaaaaaactactgccaaacaggccttagaaatggtg
gaacctcaaaggaaaacgaccgtagtgtatagtccttcttggcacaaaggcgttatagga
atagtagcctctcgtataatagaacatcattataggcctacgatagtgttcaccaaaaaa
gatgatcttttagtggcttcggcacgctcgatagaaggaatagatatttatgaagctcta
tgtcaatgtcaagaacatatagaacaatttggagggcataaacaagcagcggggctctct
ataaaagagaataacttagagggattcaaatcaaaatttgaacgagtaatagaaaatatg
acctctgaaaaagattttatccaaacaacaattatagattctgaaatacagttagaagat
atcacgcctaagttttggagaatcttaaaacgctttgaaccctgtggcccagataacaga
catcccgtattagcatataagaatataaaatacgatgactcagcaaggctagtaggagaa
gataaatctcatctgaaattaaatatatcatcccctaacagcgaaaaacgctataacgcc
atagcttttaaaaaggcttattttctacctgaaatagaaagccgtggggaatactcaatc
gcttttagcttaaaagaaaacaactggatgaatatgatctctattgattttcacataaaa
gatatacattttgatatctag
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