Ichthyobacterium seriolicida: JBKA6_0510
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Entry
JBKA6_0510 CDS
T05228
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ise
Ichthyobacterium seriolicida
Pathway
ise03420
Nucleotide excision repair
ise03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ise00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JBKA6_0510
03430 Mismatch repair
JBKA6_0510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ise03400
]
JBKA6_0510
Enzymes [BR:
ise01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JBKA6_0510
DNA repair and recombination proteins [BR:
ise03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JBKA6_0510
MMR (mismatch excision repair)
Other MMR factors
JBKA6_0510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_11
AAA_30
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
BAV94523
UniProt:
A0A1J1E9E1
LinkDB
All DBs
Position
672931..674982
Genome browser
AA seq
683 aa
AA seq
DB search
MNDQLSELNEAQRLAVEKTEGPVMIIAGAGSGKTKVLTCRVANLINKGVDPTNILSLTFT
NKAANEMKHRIRNIVGDKADKLLMGTFHSVLAKILRIESDKLGYSSNFTIYDQIDSSKVI
TDIINEMQLDKDIYKVKFVQNRISLLKNNLITVEEYYHNRELQKQDIYSKRVKMGEVYQK
YINTCFNASAMDFDDILLKANELFHTDSETLIKYQNRFKYIMVDEYQDTNHCQYLIVKTL
SEKYKNICVVGDDAQSIYSFRGANIQNILNFKTDYKDVSVFNLEQNYRSTKNIVGAANSI
IKNNTEQLDKNIWSDNNSGEKLGVFKAFNSNEEGDFVARSIIDNIQDRNNFKNFAVLYRT
NSQSRAIEDGLRKKNIPYKIYGGTSFYQRKEIKDIVAYLRLITNLKDDEALKRSINYPAR
GIGDTTLEKLTKVSLEYGKPIFEVIENIDELDININSGTRNKLRGFYNMISEFRDESKDK
NAFEITDYILNTTGLAKELHGDLTIEGRNRYENVKELIGSIKIFCASRASMDREASISQF
LEEVYLATDYDNDNNSENKVSLMTIHMSKGLEFDTVFIVGMENNLFPSRLSTSLPEEIEE
ERRLFYVAITRSKRKVYMSYTQSRIQWGTVTNPSPSIFLKEIDKKYLELLNIDRIGGESS
GDSSSSYRSFGTNSKYKRPYRRY
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatcaattatccgagctaaacgaggctcaacgtttagccgtagaaaaaacagaa
ggaccagtgatgattatagcgggagcaggttctggaaaaactaaagtattaacttgcaga
gtagctaatctaataaacaaaggtgttgacccaacaaacatcttgtctcttacttttact
aataaggctgccaatgaaatgaaacatcgaataaggaatatagtcggagataaagctgat
aagttattgatgggaacctttcactctgtattggccaagatattgagaatagaatcagac
aaattaggttattctagtaatttcactatttacgatcagatagattcatcaaaagttata
acagatatcataaatgaaatgcagttagataaagatatctataaagtgaaattcgtacaa
aatagaatatctcttctcaaaaataatctcataactgttgaagagtattaccataacaga
gaattgcaaaagcaagatatatacagcaagcgagtaaagatgggagaggtatatcaaaaa
tatatcaatacttgtttcaatgcttctgccatggattttgatgatatactgttaaaggca
aacgaattgtttcacaccgattcggagactctaattaaatatcaaaataggtttaaatac
attatggtagatgagtatcaagataccaatcactgtcagtatttaatagtaaaaacacta
tctgagaaatataaaaacatatgcgttgttggagatgatgctcagagtatttattccttt
aggggtgctaatattcagaatattttgaacttcaaaactgattataaagatgtctctgtt
ttcaatttagaacagaactatcgatctacaaaaaacatagttggagctgctaacagcatt
atcaaaaacaatacagaacaactagataaaaatatatggagcgataataattctggagaa
aaattaggtgtttttaaggccttcaatagtaatgaagaaggagatttcgtggctagatct
ataatagacaatattcaagatagaaataattttaaaaattttgccgttttatacaggacg
aattcccaatctagagctattgaagatggtcttagaaaaaaaaatattccttacaagatt
tatggaggcacatctttttatcagaggaaagagataaaagatatcgtagcctatctgcga
cttattacaaatttaaaagatgatgaagctctaaagaggagtataaactatccagctaga
ggaataggagatacaactcttgagaaattgacaaaagtgtctttagaatacggtaaacct
atatttgaagttatagaaaatatagatgaattagatattaatatcaattcaggaactaga
aacaaattgagaggtttctacaatatgattagtgaatttagagatgagagcaaggataaa
aacgcttttgaaattacagactatatcctaaacactacagggttagctaaagaattgcat
ggtgatttgactattgagggtcgtaatagatatgaaaatgtaaaagagcttataggaagt
ataaaaatattttgtgcgagtagagcttctatggatagagaggcttctatatctcaattt
ttagaagaggtctatttagcaactgattacgacaatgataataattctgaaaataaagtc
tctttgatgactatccatatgtctaagggattggaatttgatactgtgtttatagtaggt
atggagaacaatttatttccatctagattgtctactagtttgcctgaggaaatagaagaa
gagagacgtttgttttacgtagctattaccagaagtaagaggaaggtatatatgtcttat
actcaaagtagaattcaatggggaacagttacaaatcctagtccgagtatatttttaaaa
gagatagataaaaaatatttagaattgttaaatatagatagaataggaggagaatctagt
ggtgatagtagtagtagctatagaagttttggcacaaactccaaatacaagaggccttat
agaagatattaa
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