Ichthyobacterium seriolicida: JBKA6_0539
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Entry
JBKA6_0539 CDS
T05228
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ise
Ichthyobacterium seriolicida
Pathway
ise03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ise00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JBKA6_0539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ise03019
]
JBKA6_0539
Messenger RNA biogenesis [BR:
ise03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JBKA6_0539
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
HEPN_AbiU2
Motif
Other DBs
NCBI-ProteinID:
BAV94552
UniProt:
A0A1J1EAL0
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All DBs
Position
705312..706880
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AA seq
522 aa
AA seq
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MIMDYALFILASIVSVGTGFVMSNVLDKRKRSVLLSEAKKKANGIVEESKIKSENIKEEK
LLSAKKKIAEIKSKHDSVIKSRNNKIAHIEKILKSKEHKVNKYLEEYKVKSDLLEAEKNN
YRTLLSIVENKKEELEQSRKEQIAILENISNISVGEAKKELLKSLKEEVDTEAMVYAQDV
LEETKIAAEAEAKKLIIQTIQRVGVETSIENSVSVFNIDSDDMKGRIIGREGRNIRALEA
CTGVEIIVDDTPESIVISCFDPVRREVARLALKVLVSDGRIHPARIEEVVSKANNQIEQE
IIEVGKKTVIEVGIHGLHPQLIKIVGRMKFRSSYGHNLLQHSKEVARLSAIMASELGLDP
KLAKRAGLLHDIGKVPETESEKPHALLGMEWAEKYRENKEVCNAIGAHHDDIEMTSLISP
IVQVCDAISGSRPGVRHQSADIYSKRLRDLENLAMCYSGVNKSYAIQAGRELRVIVESEK
ISDKEASKLAFNISKKIENEMTYPGQVKVTVIRETRAVSIAK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgattatggattatgcgttatttatattagcttctattgtaagtgtgggtacaggcttt
gtcatgtctaatgttttagacaagagaaaaagaagtgtacttctatcagaagcaaagaaa
aaagctaatgggattgttgaagagtcaaaaataaaatcggagaacataaaggaagaaaag
cttttaagtgctaaaaaaaagatagctgaaataaaaagcaaacacgatagtgttatcaaa
tctagaaataataagatagctcatatagaaaaaatacttaaaagtaaggagcataaagtc
aataaatacttggaagagtataaagtaaaaagtgatttattagaggctgaaaaaaataat
tataggacacttttatccatagtcgaaaataaaaaagaggaattagaacaaagcagaaaa
gagcaaattgccatattggaaaatatatctaatatttctgtaggagaggccaaaaaagag
cttttaaaaagtttaaaagaggaggtagataccgaggctatggtatatgctcaagatgtt
ttagaagagactaaaatagctgcagaagcagaggctaaaaagctaataatacagactata
caaagagttggggtagagacttcaatagaaaattctgtgtcggttttcaatatagattcc
gatgatatgaaggggcgtataatagggagggaaggtcgtaatataagagctttagaggct
tgtacaggtgttgaaataatagtggatgacacaccagaatctatagttatatcttgtttt
gatcccgttaggagggaagtagctaggctagctcttaaagtattagtttcagatggtcgt
attcatccagctagaatagaagaggtagtgtcaaaagctaataatcagatagaacaagaa
attatagaggtaggtaaaaaaacagttatagaggtagggatacatgggttgcatcctcaa
cttataaaaatagtaggaagaatgaaatttcgatcttcttatggtcataaccttttacaa
cactctaaggaggtagctagattgtcggctattatggcatctgaattaggtttagatcct
aaattagcaaagagagcaggcttgttgcatgatatagggaaggttccagagacagaatca
gaaaagccacatgctcttttgggaatggaatgggccgaaaaatacagggaaaataaagaa
gtttgtaatgctattggtgcccatcatgatgatattgagatgacttcattgatatctcct
atagttcaagtatgtgatgctatttctgggtctagacctggagttcgtcatcaatctgct
gatatatactccaagaggttgagagatcttgaaaacctagctatgtgttattcaggagtt
aataaatcttatgctatacaggcgggtagagagttaagagttatagttgagagcgagaaa
atttcagataaggaagcttctaaattagcttttaatatctctaagaaaattgaaaatgag
atgacctatcctgggcaggtgaaagtaacagtaatccgtgaaacacgtgctgtaagcata
gctaagtag
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