Ichthyobacterium seriolicida: JBKA6_0643
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Entry
JBKA6_0643 CDS
T05228
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ise
Ichthyobacterium seriolicida
Pathway
ise03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ise00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JBKA6_0643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ise03021
]
JBKA6_0643
03019 Messenger RNA biogenesis [BR:
ise03019
]
JBKA6_0643
Transcription machinery [BR:
ise03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JBKA6_0643
Messenger RNA biogenesis [BR:
ise03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JBKA6_0643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
S1CSD-TOTE-2
AAA_25
AAA_19
Mor
AAA
Motif
Other DBs
NCBI-ProteinID:
BAV94656
UniProt:
A0A1J1EAW3
LinkDB
All DBs
Position
complement(847206..848786)
Genome browser
AA seq
526 aa
AA seq
DB search
MFNKQDLEVLTLPELQAIAKKIGLNKYSKKNKQDIIYSILDFQSEANSSDLKLEKIKTEK
PNHTNESHNNLDDNHTVVKRKNNPRVRIENKNHSESRVDNNSDSKTDETDTVTESKNTVD
REIDTNHRQETSRYPQKRSRYNPKNNKGESEYEFPGTLTTEGVLEIMQEGGYGFLRSSDY
NYLNSPDDVYVSVSQIRLFGLKTGDTVTGTIRPPKKGEKYFPLIKVNEINGCDPNAVRDR
IAFKHLVPLFPEEKLNLDGKKSTTATRIIDMFSPIGKGQRAMIVAQPKTGKTILLKEIAN
TIAENHPEVYQIVLLIDERPEEVTDMKRSVNAEVIASTFDESAELHVKIANIVLEKAKRM
VECKHDVVILLDSITRLARAYNVVSPASGKILSGGVDSKALHKPKGIFGAARNIEGGGSL
SIIATALVDTGSKMDEVIFEEFKGTGNMELQLDRKIANRRIYPAIDLISSGTRRDDLLLD
KQTLQRMWILRKYLNDMNPLEAMESLKDKIEKSKDNQEFMNSMNDD
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacaaacaagacttggaggtgttgactcttccagaattgcaggctattgcaaaa
aaaataggtttaaataaatattctaaaaagaacaaacaagatattatttattccatattg
gattttcaatcagaggcaaatagttctgatttaaaactagaaaaaatcaagacagaaaaa
ccaaatcatacaaatgaaagtcacaataatctagatgataaccatactgtcgtaaaaaga
aaaaataatccccgtgtgagaatagaaaacaaaaatcactcagaatctagagtagataat
aattctgactctaaaacagatgagactgatactgtaacagaaagcaagaatactgtcgat
cgggaaatagatacgaaccacagacaagagacatctagatatcctcaaaaaagaagcaga
tacaatcctaaaaataacaagggcgaaagcgaatatgaattcccaggaactctgacaaca
gagggagttttggagattatgcaagagggtggatatggatttttacgctcttcggattac
aactatttaaactctccagatgatgtatatgtatcggtgtctcaaatcaggttatttgga
ttaaaaacaggagatactgttacaggaactataagacctccaaaaaagggagagaaatat
tttcctcttataaaggtcaatgagataaatggttgcgatcctaatgccgtgagagacagg
atagcttttaaacatttggttccccttttcccagaggagaagttgaacctagatggaaag
aaaagtactactgctacaagaattatagatatgttttctcctatagggaaaggacaaaga
gccatgattgtagcacagcctaaaacagggaaaaccatacttttaaaagaaatagctaat
actatagctgagaatcaccccgaagtatatcaaatagttttactcatagatgaaagacct
gaagaggtcaccgatatgaaaagaagtgtaaatgcagaagtgatagcatctacatttgat
gagtcagctgaactacacgtaaaaatagcaaatatagtactagaaaaggcaaagagaatg
gtagaatgtaagcatgacgtggttatattactcgactctataacccgactggctagggct
tataacgtggtctctccagcttctggaaaaattctctctggtggtgtagattctaaggcc
ttgcataaacctaagggaatatttggagctgctagaaatatagaaggtggaggctcatta
tctattatagctacagcccttgtagatacaggctctaaaatggatgaagtaatctttgaa
gaattcaagggaactggtaatatggaattacaattggataggaaaatagctaatagaaga
atatatccggccatagacctaatatcttctggaactcgaagagacgatctactactagat
aaacaaactctacagagaatgtggattttaagaaaatacctaaacgatatgaatcctcta
gaggctatggagtcattaaaagacaagatcgaaaaatctaaagacaatcaagagttcatg
aattccatgaacgacgactag
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