Ichthyobacterium seriolicida: JBKA6_0942
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Entry
JBKA6_0942 CDS
T05228
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ise
Ichthyobacterium seriolicida
Pathway
ise03030
DNA replication
ise03430
Mismatch repair
ise03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ise00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JBKA6_0942
03430 Mismatch repair
JBKA6_0942
03440 Homologous recombination
JBKA6_0942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ise03032
]
JBKA6_0942
03400 DNA repair and recombination proteins [BR:
ise03400
]
JBKA6_0942
Enzymes [BR:
ise01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JBKA6_0942
DNA replication proteins [BR:
ise03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JBKA6_0942
DNA repair and recombination proteins [BR:
ise03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JBKA6_0942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
BAV94955
UniProt:
A0A1J1EAJ0
LinkDB
All DBs
Position
complement(1216847..1221151)
Genome browser
AA seq
1434 aa
AA seq
DB search
MYLIFDTETTGLPKDFKAPITDTDNWPRMIQLAWQLHDEKGKLIEVKNYIVKPEGYTIPF
NSTKIHGISTERAIEQGVTIDLVMSEFNLALDKSKFLVGHNVGFDINIIGAEMHRKALDT
SRITSLKSIDTCGDLTANLCKIKGGRGGSFKFPNLMELYTFLFEEEFSESHNASADVEAT
SRCFLEMIRRDILSPEDLSTTESEIEEFKIANPTEIQLLGLNIQPYLPIENAKDENNTDI
KILEKTDLELDDISFTHLHCHSKFSILQSTLSVSNLVDLAKRDNMSAIALTDYGNMFGAY
SFLSESKKKGIKGILGCEMNICDNCQDKTKKDNGLSMVFLAKNKQGYHNLANLCTHSHVN
GFYYVPRIDRPLVQKYKDNLIVLTGDIHSEIPFLILNVGESQAERSFVWWHEQFGDDFYA
ELIRHDLQENEIVNNTLLKFSQKYGVKVIASNNVHYANQEDEDAHDILLCVKNGEYQSTP
KGIKRDERFGFPNNRFHFSSTQEMKILFKDIPYAIENTQEIVDKCESYTLKRDVLLPRFD
IPKDFVSDDDAENITEENAYLRHLTYQGAKDRYGVINDKLKERIDFELETIKKTGYPGYF
LIVQDFTSQARKMGVSVGVGRGSVAGSLVAYCIGITNIDPIKYGLLFERFLNPERVSLPD
IDIDFDDEGRNKIIDWTVKKYGYNQVAQIITYGTMGAKSSIRDVGRVLQMPLDRTNYISK
LIPDSISLNGIWNMNKEQLKSKSKDKYKDVIKLKELSEKENTLESKVINKARVLEGSVRN
IGTHACGIIIAPDSISKYIPLTTSKDSKLLVTQFDNYVVEDAGLLKVDFLGLKTLTIIKD
TLKIIDANYGKKLDIDQIDLEDQKTFDLFKRGDTIGVFQYESPGMQKYLKELKPTVFEDL
IAMNALYRPGPIEYIPFFIKRKQGVTKIEYDLPEMEEHLRETYGITVYQEQVMSLSQKLA
GFTKGEADVLRKAIGKKIKSLIDEIKPKFLEGCEKKGHDRKICEKIWKDWEAFASYAFNK
SHSTCYAYIGYQTAYLKANYPAEFMASVLSNNMNNISSVTFFMNECKRMKIEVLIPDINE
SQYKFTVNENRDIRFGMGALKGVGGATIKDIVQEREKNGKFTSIFNMLKRVDIRAINKTA
LEGFAMSGTFDSVLKDNSRACLFHENNGVSFLQEILKWANVYKKNIESPQLSLFGDNKET
QIPEPKFPNCQEWDKINLLKREKEIIGVYVSGHPLDNYKTVINNFCSHDLEHVKYIENNP
QQFLNKSFSFAGIVISVKHNISKNGNYWGIFNVEDYKNSFSITLFGEDYLKYKHFFIEGQ
FLYLSGAFKLGWSDRLNFKLIEVCLLRDVVSKAKSLDVEMSLEKVDSHITDELHSVYSKY
KGDKSFKMTVFTKVEDRDIHVPLISRLRIDINTSLLEKIDMLKQQEYLDYKIEL
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atgtaccttattttcgatactgagaccacaggattgccaaaagatttcaaggctccaatt
actgatacggataattggccacgaatgatccaattagcttggcagctacacgatgaaaaa
gggaaactaatagaggtaaaaaactatattgttaaaccagaagggtatactattcctttt
aattccacaaaaatacatggaatctctacagagagggctatagaacaaggcgttactata
gatcttgtcatgtctgagtttaatctagccttagataaatcaaaatttctagtagggcat
aatgtgggtttcgacataaatataataggtgctgaaatgcatcgaaaagccttagataca
agcagaataacctccttaaaaagcatagatacatgtggtgatttaactgctaatctatgt
aagataaaaggaggcagaggaggtagttttaaattccctaatcttatggaattatatacc
tttttatttgaagaagaattctctgaatctcacaatgcttctgcagatgtggaagctact
tctagatgttttttggagatgataagaagggacatattaagccctgaagatttatccaca
acagagtcagagatagaagaatttaaaattgcaaatcctacagaaatacagttgttaggt
ctcaatatacagccctatctacctatagagaatgccaaagatgagaataataccgatata
aaaattctggaaaagacagacctagagttagatgatatttcttttactcatttacattgc
cattctaaattttccatattacaatcgaccttaagcgtatctaatctggtagatcttgct
aagagagataacatgtcggctatagctttaacggattatggtaatatgtttggagcttat
agttttttatctgaatccaaaaaaaaagggataaaagggattttaggatgtgagatgaat
atttgtgacaattgtcaagacaagactaagaaagataatggcttgtctatggtgtttttg
gcaaagaataaacagggttatcacaatttagcaaatctgtgtactcattctcatgtaaat
ggcttttattacgttcctaggatagacaggcctttggtgcaaaaatacaaggataattta
atcgttctgacaggtgatatacactctgaaatcccttttttaattttaaatgtaggagaa
agccaggctgagagatcttttgtgtggtggcacgagcagtttggtgatgatttttatgct
gagctcataagacatgatctacaagagaatgaaatagtaaataatactctattgaaattt
tctcagaaatatggggttaaagtaatagcttcgaataatgttcactatgcaaatcaggaa
gatgaagatgctcacgatatcttattgtgtgtaaagaatggtgaatatcagagtactccc
aaagggataaaaagagatgagaggtttggatttccaaataatagatttcattttagttcc
actcaagagatgaaaatccttttcaaggatataccatatgccattgaaaacactcaagaa
attgtagataaatgcgagagttatactttaaaaagggatgttttattacctcgttttgat
atacctaaagattttgtatcagatgatgatgcagaaaatatcaccgaagaaaatgcctat
ttgagacatctaacttatcaaggagctaaagacagatacggagttattaacgataagtta
aaagagagaatagattttgaattagaaacaataaaaaaaacaggttatcctggttatttt
ctaatagtacaagattttacctctcaagctagaaaaatgggagtgtccgtaggagtaggt
agaggttcggtagctggttctctagtggcctattgtatagggataacaaatatagatcct
ataaaatacggattgctattcgagagatttttaaatccagagagggtctctcttcccgat
atagatatagattttgacgatgaaggaagaaacaaaataatagattggacagtaaaaaaa
tacggttataatcaagtagcacagataattacctatggtaccatgggcgctaaatcttcc
ataagagatgtaggaagagttttacagatgcctctagatagaactaattacatatccaaa
ttaattccagattccattagtttaaatggcatttggaatatgaataaagaacaacttaag
agtaaatctaaggataagtacaaagatgtcatcaaactaaaagagttatcagaaaaagaa
aacaccttagagtcgaaggtcataaataaagctagagtactagagggatccgtaagaaat
ataggaactcacgcgtgtgggataattatagctccagatagtatatccaaatatattcct
cttactacatctaaagattccaaattattggtgactcaattcgacaattatgtggtcgag
gatgcgggattattaaaagtagatttcttaggattaaaaaccctgaccataataaaagac
actttaaagattatagatgccaactacggtaaaaaattagatatagatcagatagattta
gaagatcaaaagacttttgatctgtttaaaaggggtgatacaataggtgtttttcaatat
gaatcacctggcatgcagaaatacttaaaagaattaaaacccactgtatttgaagatcta
atagctatgaatgctctatatcgtccagggcctatagaatacattccattttttataaag
agaaaacagggggtaaccaaaatagagtacgatctcccagaaatggaagaacatttaaga
gaaacatatggaatcacggtctatcaggaacaggtcatgtctctttcacaaaaattagca
ggatttactaaaggagaggccgatgtacttagaaaagctatagggaaaaagataaaatca
ctaatagatgagataaaacctaaatttttagagggatgtgaaaaaaaaggacatgacagg
aaaatatgtgaaaaaatatggaaagattgggaagcttttgcatcttatgcttttaacaaa
tcgcattctacttgttatgcttatataggttatcaaacggcttatctaaaggctaattat
ccagcggagtttatggcctctgtattgagcaataatatgaataatatcagtagtgtgact
ttctttatgaacgagtgtaaacgaatgaaaatagaggttttgatccctgatataaatgag
agtcaatacaaatttacagtaaatgaaaatagagatataaggtttggaatgggagcttta
aaaggagtaggtggtgcaacgataaaggatatagttcaagagagagaaaaaaatggaaaa
ttcacctctatattcaatatgctaaaacgagttgacataagagctattaataagactgct
cttgaggggtttgctatgagtggtactttcgactctgtgttaaaagataacagtagggct
tgtttatttcatgaaaataacggagtatctttcttacaagaaattttaaaatgggctaat
gtatataaaaaaaatatagaatctcctcaattgtctctctttggagataataaagagact
caaataccagaacctaagtttccaaattgtcaagagtgggacaagatcaatttattaaaa
agagaaaaggagataataggagtatacgtgtcaggacatcctctggataattataagaca
gtaataaataatttttgttctcacgatttagagcatgtaaaatacatagaaaataatccc
caacagtttttaaataaatcattttcttttgcaggtatagtgatcagtgtaaaacacaat
atttctaaaaacggaaattattggggaatatttaacgttgaagattataaaaacagtttt
agtataactctatttggagaagattatctcaagtataagcacttttttatagagggacaa
tttttatatctaagtggagctttcaaattagggtggagcgatagattgaattttaaatta
atagaagtatgtctattaagagatgtagtatcaaaggcaaaatctctagatgtagaaatg
tctctcgaaaaagttgacagtcatattacagatgaattacactctgtttattctaagtac
aaaggggataagtcatttaagatgacagttttcactaaagtggaggatagggatatacat
gtacctctcattagtaggttgagaatagatataaatacatctctgttagaaaagatagat
atgttaaagcaacaagagtacttagattataaaattgaattatag
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