Ichthyobacterium seriolicida: JBKA6_1303
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Entry
JBKA6_1303 CDS
T05228
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ise
Ichthyobacterium seriolicida
Pathway
ise03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ise00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JBKA6_1303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ise03019
]
JBKA6_1303
03400 DNA repair and recombination proteins [BR:
ise03400
]
JBKA6_1303
Enzymes [BR:
ise01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JBKA6_1303
Messenger RNA biogenesis [BR:
ise03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JBKA6_1303
DNA repair and recombination proteins [BR:
ise03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JBKA6_1303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
SegE_GIY-YIG
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAV95316
UniProt:
A0A1J1E5J4
LinkDB
All DBs
Position
1693765..1695711
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AA seq
648 aa
AA seq
DB search
MSSISNQNSINNDNTPLEVLKKYWAYDSFRPVQEDIINDILLGKDTLALLPTGGGKSICF
QIPAIIREGVCIVISPLISLMKDQIDTLTKKGISAVAITSEYTNNEIHGLLQDAQNGNIK
FIYLSPEKLSSKQFREYVSYMRVSLLAVDEAHCISQWGYDFRPSYLEIANIRSVIRSDVP
VLALTASATPHVVDDIQKQLLFRKKNVIKKSFERKNLAYVVLSEEDKNHRLISILKKTSG
TGIVYVKNRRRTKEISDFINSQSISSDFYHAGIDSKDKTEKQNSWKREEIRVIVSTNAFG
MGIDKPNVRFVIHMDIPNSMEAYFQEAGRAGRDNEKSYCIMIVNSNDADQLEEMFYNTLP
SFEVVRDTYIGLCNYLQIPKGEIIKDKLPFYIRDFCNKKDLNFIKVFNVLRLLHRERIIF
FSEREKRQTKIMFNVDSDYIFEYLQVNTYLDNTVKTILRSYAGINSKFVNVDIGLLSERS
GINIYDLNKNLERLSKDGIILYDKAHAIQTIKFLVPRQDGDTISTIRENIESNNKRNIDR
LNSIIDYVSDNNICRSVQLLKYFGEKQVCKCCVCDVCLDKKRTGVDSKRYLSISDEIKSI
LNSKAHTSREIIDITKNRDKQELLECLTIMLESGVVKMNEYGEYELQS
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgataagtaatcaaaatagcattaataatgataacactcctttagaagtgtta
aaaaaatactgggcttatgattcttttcgtcctgttcaagaagatataatcaacgatatc
cttctaggaaaagatactctagctctgttgcctaccggtggaggtaagtccatttgtttt
cagattccagctattattagagagggtgtttgcatagtgatatctccattgatatcactc
atgaaggatcaaatagacacacttacaaaaaaaggtataagtgctgtagctataacgagt
gagtatacaaataatgagatacatggtcttttgcaagacgctcaaaatggtaatataaag
ttcatttatttatctccagaaaaattatcatccaagcaatttagagaatacgtttcatac
atgagagtatctctattagcagttgatgaagctcattgtatttcacaatggggatacgat
ttcaggccttcttacttggagatagctaatataagatctgttattcgctcagatgttcca
gtccttgcattaaccgcatctgcaacgcctcatgttgttgatgatatacaaaaacaactt
ctatttagaaaaaaaaatgtaatcaaaaaatcctttgaacgcaaaaatctagcctatgta
gttttaagtgaagaagataaaaatcatcgtttgatcagtatacttaaaaagacgagtggt
acaggaatcgtttatgttaaaaacaggagacgtacaaaagaaatctctgattttataaat
agtcaatctatctcttcagatttttatcacgctggaatagatagtaaagacaaaacagaa
aaacaaaactcttggaaaagagaagaaataagggtgatagtctctacaaatgcttttggt
atgggtatagacaagccaaatgtgaggtttgtaatccatatggatattccaaatagtatg
gaggcttattttcaagaagctggaagagcaggcagggataatgaaaaatcctattgcata
atgattgtgaattccaatgatgcagatcagttagaagagatgttctacaatacccttcct
tcttttgaggtagtaagggatacttatatagggctttgcaattacttgcaaatacccaag
ggagaaatcataaaagacaagctccctttctacataagagacttctgtaataaaaaggat
ttaaactttataaaagtttttaatgttttacgtctattacacagagagaggataattttt
ttctccgagagagagaagaggcaaaccaagataatgttcaatgtagatagtgattatata
tttgaatatttacaggtaaatacttatttggataatactgtaaaaaccatattgaggagt
tatgctggcataaacagtaaatttgtgaatgtagatataggcctgttatctgagagatca
ggaattaatatatacgatttgaacaaaaatcttgagagattgagcaaagatggcataata
ctttatgataaagcgcatgccatacagactatcaaatttttggttcctaggcaagatggg
gataccataagtacaatacgagaaaatatagaatctaataacaaaagaaatatcgatcgt
ctcaatagtattatagactatgtctctgataataatatttgtagaagtgttcagttattg
aaatattttggagaaaaacaagtttgtaagtgttgtgtttgtgatgtttgtctagataaa
aaaagaacaggggttgacagtaaaagatatttatctatttccgatgagataaaaagtata
cttaattcaaaagctcatacttctcgtgaaataatagacattacaaaaaatagggataag
caagagttgcttgaatgtttaactattatgttggagtcaggtgtcgttaaaatgaatgag
tacggagagtacgaattacagtcttaa
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