Ichthyobacterium seriolicida: JBKA6_1382
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Entry
JBKA6_1382 CDS
T05228
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ise
Ichthyobacterium seriolicida
Pathway
ise03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ise00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JBKA6_1382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ise03019
]
JBKA6_1382
03016 Transfer RNA biogenesis [BR:
ise03016
]
JBKA6_1382
Enzymes [BR:
ise01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
JBKA6_1382
Messenger RNA biogenesis [BR:
ise03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JBKA6_1382
Transfer RNA biogenesis [BR:
ise03016
]
Prokaryotic type
tRNA degradation factors
JBKA6_1382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
RNase_II_C_S1
S1_2
Motif
Other DBs
NCBI-ProteinID:
BAV95395
UniProt:
A0A1J1EBT1
LinkDB
All DBs
Position
complement(1803247..1805379)
Genome browser
AA seq
710 aa
AA seq
DB search
MKIPQITKETINLVDGRTISLETGKLARQADGAVVVSMGGTMLLATVVASKTAKEGADFF
PLTVDYREKFFASGKIPKGYVKREARPSDDEVLTMRLVDRVLRPLFPKDYYCEVQVMIQL
ISYEEGVLPDALVGLAASAAISVSDIPFEGPISEVRVARIDGEFVINPTKEQLKSSDMDM
IIGASQDSIVMLEGEMGEVSERDMIEGMKVAHEAIKEQIKAQLNLVSKLGLSDKKREYSR
VILDKDLYDIVNERSYDKCVEILKSKFEKRVRNEKFESLLQDIILDFDRRDEGFDLDLVK
GYFNDVKKKAVRNMTLNEGIRIDGRSHTDIRDIWCEVDYLPFSHGSAIFTRGETQSLTSV
TLGNNLDANRKDGVTNKSEEKFFLHYNFPPFSTGEVKPIRGVSRREIGHGNLAERALKGM
IPHDCPYTVRVVSDILESNGSSSMATVCAGTMALMDAGVKMKKHVSGIAMGLIIDENNSE
NFAVLSDILGDEDHLGDMDFKVTGTKDGLTSCQMDMKVKGLSYEILEKALTQAKEGRMHI
LNKLIEAIPHEREALKPHCPKIVVIEISKEFIGAVIGPGGKVIQEMQLNTGVTISIEEKN
EKGIIEIIGVNQEGIDKAVKEIEAITFVPEIGEVYNGIVKSVVSFGAFIEIAKGHQALLH
ISEIAWSMVEKVEDHLTEGQQLEVKLVGKDPKTGKFRLSRKVLIEKPVQQ
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattccgcaaataactaaagagactattaatttagtcgatggaagaactatttct
ttggagacaggcaaattagctagacaagctgatggagccgttgttgtgagtatgggagga
accatgctactagctacagttgtagcttctaaaacagctaaggagggggctgattttttc
cctctaacagtagattatagagagaagttttttgcatctggaaaaatacctaagggttac
gtaaagcgtgaggctagacctagtgatgatgaggttttgaccatgcgtttggtcgacagg
gttttaaggcctttgtttcctaaagattattactgtgaggttcaggtgatgattcagtta
atatcatacgaagagggggtactgcctgatgctttggtaggattagctgcatctgctgcc
atatctgtttcggatataccttttgaaggacctatttccgaagtgcgtgtggcgcgaata
gatggggaatttgttataaatcctacaaaggagcagttgaaaagttctgatatggatatg
atcatcggagcttctcaagattctatagtcatgttagaaggagagatgggtgaggtatct
gagagggatatgatcgaaggtatgaaggtagctcatgaggctattaaagaacaaattaaa
gctcagctaaacttggtttccaaacttggattgagcgataaaaaaagagagtattctcgt
gtaatattagacaaagatctatacgatatagtaaatgaacgctcttatgataagtgtgta
gaaatattgaaatctaagtttgaaaagcgtgttagaaatgagaaattcgaaagtctctta
caagatataatattagattttgatcgtagagacgaaggttttgatcttgatttagtcaag
gggtatttcaatgatgtcaaaaaaaaggctgttagaaatatgactttaaacgaagggata
cgcatagatggtaggagtcatactgatattcgtgatatatggtgtgaggtagattatttg
ccatttagtcatggttcagctattttcacaagaggagagacacaatcattaacatctgtt
actctaggtaataatttagatgctaatagaaaggatggtgtaactaataaaagtgaagag
aagtttttcttacactataatttccctcctttttctacgggagaggtcaaacctataagg
ggtgtttctcgtagagagataggtcatggtaatttggccgagagggctttaaaaggaatg
attcctcatgattgtccttatacggttagagtggtttctgacatattagaatctaatgga
tcttcttctatggctactgtatgtgctggaactatggctcttatggatgctggtgttaaa
atgaaaaaacacgtttcgggcatagctatgggcttgattatagatgaaaacaacagtgag
aactttgctgttttatctgatatattgggtgatgaagatcacttaggagatatggatttt
aaagttacaggcaccaaggacggattgacttcttgtcagatggatatgaaggtgaaaggg
ttgtcttatgagattttggagaaggctttgactcaagccaaagaggggcgtatgcatatt
ttgaacaaattgattgaagctatacctcatgagagagaggctttaaaacctcattgtcct
aaaatagttgtgattgaaatatctaaagaattcataggagctgtcataggtcctggaggt
aaggtgatacaagagatgcagctcaatacgggagtaactatttctatagaagaaaaaaat
gaaaaaggtataatcgaaataataggtgtgaatcaggaggggatagacaaagcggttaag
gagatagaagctattacttttgttcctgagataggtgaagtatacaatggtatagtaaaa
tctgtggtttcttttggtgcatttatagagatagctaaaggtcatcaggctctacttcac
atatctgaaatagcttggtccatggtagaaaaggttgaggatcatttaactgaagggcaa
caattagaggtcaagttagttggtaaagatccaaagacaggtaagtttcgcctatctaga
aaagtacttatagaaaagcccgttcaacaatag
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