Ichthyobacterium seriolicida: JBKA6_1465
Help
Entry
JBKA6_1465 CDS
T05228
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ise
Ichthyobacterium seriolicida
Pathway
ise03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ise00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JBKA6_1465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ise03019
]
JBKA6_1465
03400 DNA repair and recombination proteins [BR:
ise03400
]
JBKA6_1465
Enzymes [BR:
ise01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JBKA6_1465
Messenger RNA biogenesis [BR:
ise03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JBKA6_1465
DNA repair and recombination proteins [BR:
ise03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JBKA6_1465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ-1-like_HTH
HRDC
RQC
RecQ_Zn_bind
HTH_40
DNA_pol3_theta
Motif
Other DBs
NCBI-ProteinID:
BAV95478
UniProt:
A0A1J1E810
LinkDB
All DBs
Position
complement(1904480..1906681)
Genome browser
AA seq
733 aa
AA seq
DB search
MDIKQPVSLKQRIDLKLKLKDYFGFDSFNENQEEIITSLLDGNDVFVLMPTGGGKSMCFQ
LPALISEGTAIIISPLIALMKNQMDSIRSISERDGVVHVLNSLLSKSELEDVKRDIRNGV
TKLVYISPESLTKQENIEFFKSVNISFFAVDEAHCISEWGHDFRPEYRTLKPITESIANV
PIMVLTATATPKVQEDIQKNLGMDNAKVFKSSFNRPNLYYEVRHKSNTESQIVKFIHSKK
GESGIIYCSSRKKVDEISELLNVNGITAVSYHAGLDAKTRAKNQDMFIMEDVDVVVATVA
FGMGIDKPDVRYVIHHSMPKSLESYYQETGRAGRDGGEGHCLAFYDYEDMEKIERFLNKK
SISEREVGLHLLQEVVSFCETSISRRKFLLHYFGEYFDEINGKGADMDDNARFKKKQIEV
KDEIHLLLDAISKTFEQYKAKEIIYILMGKSNSVTKAHKVQLLDVYKKGEHRDEKFWKAA
CRQAIVRDLLKKNIEEYGKLKLTEKGRNFLTYKPSFTMAEDHDYTKASNTVSQKSNVGDK
NLLIPLKSLRKEMSKKLGIPPFAIFQDSSLDDMCVQYPTTIKQLIGIYGVGEGKAKKFGE
QFVNLISDYVKENDILRPDDIVVKSAVNKSVLKVYIIKNTDKKLLLEDIAKAKGISMDNL
LSEIERIVNSGTNININYAIADILDEDQVEEIYDYFLNSEDDSIEKALKEFDGEYSEEEI
RMVRIKFINEVAN
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
gtggatataaaacaaccagtctctctaaagcagagaatagatttaaaattaaaattaaaa
gattatttcggatttgattcctttaatgaaaaccaagaagagattataacaagtttgtta
gacggcaacgatgtttttgttttaatgcctactggtgggggcaagtccatgtgttttcaa
ctgccagctttgatttcagaggggacggccataattatttctccccttatagccctgatg
aaaaatcaaatggattctataagaagtatctctgaaagagatggagtggttcatgtttta
aattcactattgagtaaatctgaactcgaagatgtgaaaagagatataagaaatggggtt
actaagttggtatatatctctccagaatctcttactaagcaagaaaatatagagttcttt
aaatctgttaatatttcgttttttgctgtagatgaggctcactgtatatctgagtgggga
catgattttagacccgagtatagaaccttaaagcctattacagaaagtattgccaatgtt
cctataatggtgcttaccgctacagctactccaaaggttcaggaagacattcagaaaaac
ttggggatggataatgctaaagttttcaaatcttcttttaatagaccaaatctctattat
gaggtgcgtcataaatctaatacggaatcacagatagttaaatttatccattccaaaaaa
ggcgaatctggaataatatattgttctagtcgtaaaaaagtagatgagatatcagaatta
ctaaatgttaatggtattactgctgtatcttatcacgctggtctggatgctaagactcgt
gctaagaatcaagatatgttcattatggaagatgtagatgtagtagtagctactgtagct
tttggtatgggaatagataagcctgatgtcagatatgtaatacatcactctatgcctaag
agtcttgagagttattatcaagagacaggtagagcgggaagagatggaggggaaggacat
tgtttggccttttacgactatgaggatatggaaaaaatagagagattcttgaataagaaa
tctatttctgaaagagaggtgggtttgcatttattgcaagaagtagtatctttctgcgag
acttctatctctagacgaaaatttttgcttcattactttggagaatatttcgatgagatt
aatgggaagggagcagatatggatgacaatgctagatttaagaaaaaacaaatagaagtt
aaagatgaaatacacctcttattagatgctatttcaaagacctttgagcaatacaaagcc
aaagaaataatatacattcttatgggaaagagtaattcagttactaaagctcataaagta
caacttttagacgtgtataaaaaaggggaacacagagatgaaaagttttggaaagcagct
tgtagacaagctatagtaagggatttgttgaaaaaaaacatagaagaatacggaaaatta
aaactgactgaaaaaggaaggaatttcttaacctataaaccttcatttactatggctgag
gatcatgattacacaaaagcttctaatactgtttcacaaaaaagcaatgtaggggataaa
aatttattaattccactaaagtccttgagaaaggaaatgtctaaaaaattaggtatacct
ccctttgctatttttcaagattcatctctagatgatatgtgtgttcaatatccaactact
attaagcaattgataggtatatacggtgtaggagaggggaaagctaaaaaatttggagag
caattcgtcaatcttataagtgattatgtcaaagagaatgatatcttgagaccagatgac
atagttgtaaagtcagcagtaaataaatctgtattaaaagtttatatcataaagaatacg
gataaaaaactcttgttagaagatattgcaaaagcaaagggtatcagtatggacaatctt
ctttcagaaatagagagaatagtaaactctggcaccaatataaatataaactatgccata
gcagatattctagatgaagatcaagttgaagagatatatgactatttcttgaattctgaa
gatgatagcatagaaaaagctttaaaagaattcgatggagaatactctgaagaagagatt
agaatggtcaggataaagttcataaatgaagttgctaactaa
DBGET
integrated database retrieval system
