Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101954346
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Entry
101954346 CDS
T10664
Symbol
Sox3
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor SOX-3
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
iti03000
]
101954346 (Sox3)
Transcription factors [BR:
iti03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
101954346 (Sox3)
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Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
SOXp
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
101954346
NCBI-ProteinID:
XP_040140317
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All DBs
Position
X:complement(108393513..108401350)
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AA seq
706 aa
AA seq
DB search
MPAGPGLPTDLALSLVWPPARGKTSPPEDRHPPLQQEAVPGPRPPLRSRSGAAASELHTT
VTGTLAPGCARARASGTASAPQLAGLGAHAPRSERGPCGPGRFSPNQARPWWRTLRFPSR
VITVWISWADVGNTRSPHEGHALAATEGGGSAGPVGAQASRRGSSAAASLWQTTRQATEC
PALSLQASPVRKAVKQERRSTESVSRACSGEKRRGYARRAALSSPGRCADSGGGPAVHPE
DRLGSARATVPLSKKLFFHSERLRVAMKTDFPRGPTLPLRGIGLEKPKWPESRDKKGPLS
GGRERESGDRFTPCVPHILPLHRVQEPPLGLGGGRLTARPPVNPGRSSLPGVLGTCQSRG
LRVERGGPNPNPPGNPSRYIKGPGEHPTRLRILPAQDNASGACSLRVPADLARNAXASLS
FPLALRPPSVPPTESPGLFTVAAPAPGAPSPPATLAHLLPAPAMYSLLETELKNPVGPPT
PAAGTGGPAASGGAGKNSANAGGGANAGGGSSSGASGGGGGSDQDRVKRPMNAFMVWSRG
QRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKYRPRR
KTKTLLKKDKQPATAAAAAAAAAAMSLGPMGSVVKSEPSSPPPAIASHSQRACLGDLRDM
ISMYLPPGGDAADAASPLPGGRLHGVHQHYQGAGTAVNGTVPLTHI
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcggggccaggcctcccgacagacctcgctttgtcgcttgtctggccgccggcc
cgcgggaaaacgagcccgcctgaagacaggcatcctccactgcaacaggaagctgttcca
gggccgcggcctccgcttcgctctaggtcaggagcagcggcctcggagcttcacacgacg
gtcactgggacgctggcgcccggatgtgccagagccagggcttcaggcactgcgtccgct
ccgcagctcgctgggctcggcgcgcacgcaccaaggagtgagcgtggcccctgcgggccg
gggcgtttcagccccaatcaggcccggccctggtggaggactttgcgcttcccatcccgc
gtgattactgtgtggatcagctgggcggacgtggggaacactaggtcacctcacgaaggc
catgccttagcagccactgaaggaggtggaagcgcaggcccagtgggagcacaggcctcg
cgacggggttccagtgccgccgcaagtctttggcagacaacccgacaagcgactgaatgt
cccgctctaagtctccaggcttctccagtcaggaaggctgtaaaacaagaaaggagaagc
acggaatccgttagcagagcctgctctggggaaaagcggcgcggctacgcgcggagagcg
gctctcagcagtcccggcaggtgcgcggacagcggagggggcccggcggtccacccggag
gaccgcctcggctccgctcgggccaccgtccccctctccaagaaacttttctttcactca
gagaggctccgtgttgccatgaaaacggattttccaaggggcccgaccctccccctcagg
ggcatcggactggaaaaaccgaaatggccagagagcagagacaaaaaggggccgctaagc
gggggccgggagcgagagagcggagaccggttcaccccctgcgtcccacacatactaccg
ctccaccgcgtgcaagagcctccgctaggcttgggcggcgggcggctgaccgctcgccct
cccgtcaaccccgggagatcctcactgcccggtgtactcggcacctgtcaatcacggggc
ctacgggtggagaggggcggaccaaaccccaaccccccggggaatccgagcaggtatata
aaggggcccggcgaacacccgaccaggctgcgaatactaccagctcaagacaacgcatca
ggtgcgtgtagcctgcgggttcccgctgacttggcgcggaacgcttaggcaagcctgtcc
ttcccgctggccctccggcccccaagcgtccctccgacggagtccccaggccttttcacc
gtggccgctccagcccctggagcgccttctcctcccgccacgctggcgcaccttcttccc
gccccggcaatgtacagcctgctggagactgagctcaagaacccggtggggccacccacc
ccagcagcaggcactggcggccctgcagcctccggcggcgcaggcaagaatagcgcgaac
gcaggcggcggcgcgaacgcaggcggcggtagcagcagtggcgcaagcggtggtggcggg
ggcagcgaccaggaccgcgtgaagcggcccatgaacgccttcatggtatggtcccgcggg
cagcggcgcaagatggccctggagaaccccaagatgcacaactctgagatcagcaaacgc
ttgggcgccgactggaaactgctgaccgacgccgagaagcgaccgttcatcgacgaggcc
aagcgactgcgcgccgtgcacatgaaggagtacccggactacaagtaccggccacgccgc
aagaccaagacgctgctcaagaaggacaagcagcccgccaccgccgccgcagctgccgcc
gcagcggccgccatgagcctgggccccatgggctcggtggtgaagtcggagcccagctcg
cctccgcccgccatcgcgtcgcactcgcagcgtgcgtgcctcggagacctgcgcgacatg
atcagcatgtacctgcctcccggcggggacgcagccgacgccgcttctccgctgcccggt
ggtcgcctgcacggcgtacaccagcattaccagggcgccgggactgcggtcaacggaacg
gtgccgctgacccacatctga
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