Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101954702
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Entry
101954702 CDS
T10664
Symbol
Tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04148
Efferocytosis
Brite
Membrane trafficking [BR:
iti04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
101954702 (Tgfbrap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
zf-Vps39_C
CNH
Clathrin
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
101954702
NCBI-ProteinID:
XP_005340082
UniProt:
I3MCH0
LinkDB
All DBs
Position
Unknown
AA seq
860 aa
AA seq
DB search
MMNIKAFTLVSAVERELLMGDKERINIECVECCGRNLYVGTNDCFLYHFLLEEKALPAGT
AAFTATRQLHRHLGFRKPVNELRAASALNRLLVLCDNCITLVDMLNLEPVPSGARIKGAT
AFALNENPVSADPFCVEVCILSVKRRTVQVFLVYEDRVQIVKELSTPEQPLAVAVDGHFL
CLALTTQYIILNYSTGLSQDLFPYCSEEKRPIVKRIGRQEFLLAGPGGLGMFATVAGISQ
RAPVHWAENVIGAAVCFPYVIALDDEFITVHSMLDQQQKQTLPFKEGHILQDFEGRVIVA
TSKGVYILVPLPLEKQIQDLLANRRVEEALVLAKGARRNIPKEKFQVMYRRILQQAGFIQ
FAQLQFLEAKELFRSGQLDVRELISLYPFLLPTSSSFTRSHPPLHEYADLNQLTQGDQEK
MAKCKRFLMSYLNEVRSTEVANGYKEDIDTALLKLYAEADHDSLLDLLVTENFCLLTDSA
AWLEKHKKYFALGLLYHYNNQDAAALQLWVNIVNGDIQDSTRSDLYEYIVDFLTYCLDQE
LVWTYADWVLQRSEEVGVQVFTKRPWDEQQKNSFNPDDIISCLKKYPKALVKYLEHLVID
RRLQKEEYHTHLAVLYLEEVLQQRAAAASQGSEPSDTQTKLRHLLQKSDLYRVHFLIERI
QGAGLPMESAILHGKLGEHGKALHILVHELGDFSAAEDYCLWGSEGQDAPCRRHLFHTLL
AMYLHAGPAAHELTVAAVDLLNRHATEFDATQVLQLLPGSWSVQLLCPFLTGAMRDSIHA
RRTTQVAVGLARSENLIYTYNKMKLKGSAIWLSDQKLCQLCQNPFGEPVFVRYPNGGLVH
THCATNRHTTPSSPSPGTRT
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacatcaaggccttcaccttggtctctgcggtggagcgcgagctgctgatgggt
gacaaggagcgcatcaacatagagtgcgtggagtgctgtggccgcaacctctacgtgggc
accaacgactgcttcctctaccacttcctgctggaggagaaggctctgcccgcggggacc
gccgccttcaccgccaccaggcagctgcacagacacctgggcttcaggaagcccgtgaac
gagctgcgggcggcctcggccctcaaccggctgctggtgctgtgtgacaactgcatcacc
ctggtcgacatgctcaacctggagcccgtgccctcgggggcccgcatcaaaggggccact
gcgttcgccttgaacgagaacccggtgagcgcggaccccttctgcgtggaagtgtgcatc
ctctccgtcaagcgcaggaccgtccaggtgttcctcgtgtacgaggaccgcgtgcagatc
gtcaaggagctgtccacccccgagcagccgctggccgtggctgtggacggccacttcttg
tgcctggctctgaccacgcagtacatcatcctcaactacagcactggcctctcccaggac
ctgtttccctactgcagcgaggagaagcggcccatcgtcaagaggataggcaggcaggag
ttcctgctggctggccccggcggcctgggcatgtttgccaccgtcgcagggatatcccag
cgtgctcccgtgcactgggcggagaatgtcattggggcagctgtttgcttcccatatgtc
atagcgctcgatgatgagttcatcacagtccacagcatgttggatcaacagcagaaacag
accctgccctttaaggaaggccacatcctacaggactttgaaggaagagtgattgttgcc
acaagtaaaggagtttacatcttggttccattacctctggaaaaacaaatacaggatcta
ctagcaaaccgaagagtggaggaggctttggttttagcaaaaggagcccggaggaacatt
ccgaaagaaaaatttcaggtcatgtaccgaaggattctgcaacaggcgggcttcatccag
tttgcacaacttcagttcctggaagctaaagagctgttcagaagcggccagcttgacgtc
cgggagctgatctctctctaccccttcctgttgcccacctcctcttcattcactcggtcc
caccctcctcttcacgagtacgcagacctgaaccagctgacccaaggggaccaggagaag
atggccaagtgcaaacgcttcctcatgagctacctgaacgaagtccgcagcacagaggtc
gctaatggctacaaagaggacattgacacagctttgctcaagctgtatgcagaggctgac
cacgacagcctgctggacctcctggtcaccgagaacttctgtcttctgacggacagtgct
gcctggctagagaagcacaaaaagtattttgcacttggactgctctatcactacaataac
caagatgccgccgcactgcagttgtgggtgaacatcgtgaacggggacatccaggactcc
acgcgctcagacctgtacgagtacatcgttgattttctcacctactgcttggaccaggag
ctggtgtggacctacgccgactgggtcttacagagaagtgaggaggttggcgttcaagtc
ttcaccaagagaccttgggacgaacagcagaagaacagttttaatccagatgatattatc
agttgccttaaaaaataccctaaagctcttgttaaatatctggaacatctcgttattgac
aggaggctgcagaaagaagagtaccacacccacttggcggtcctctacctggaggaggtg
ctgcagcagagggcggctgccgccagccagggctcggagcccagcgacacacagaccaag
ctccggcacctgctccagaaatctgacttgtaccgagtccactttctgatagagaggatc
cagggcgctggcctgcccatggagagcgccatcctccacgggaagctgggcgagcacggg
aaggccctgcacatcctcgtgcacgagctgggggacttctcggcggccgaggactactgc
ctgtggggctccgagggccaggacgcaccctgccgccggcacctctttcacacgctgctc
gccatgtacctgcacgccggcccggctgcccacgagctgaccgtggccgccgtggacctg
ctgaatcgccacgccacggagtttgatgccacgcaggtgttgcagctgctgcctggctcc
tggtcggtgcagctgctctgcccattcctgactggggccatgagggacagcatccatgcc
aggaggaccacgcaggtggctgtcggcttggccaggtcggaaaacttgatctacacatac
aataagatgaagttgaaaggaagcgcaatctggctctcagaccaaaagctttgccagctg
tgccagaatccctttggcgagcctgtgtttgtcagatacccaaatggagggcttgtgcac
acccactgtgccaccaacagacacacgacgcccagctcgcccagtcctggcacccggact
tga
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