Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101954822
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Entry
101954822 CDS
T10664
Symbol
Col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04151
PI3K-Akt signaling pathway
iti04382
Cornified envelope formation
iti04510
Focal adhesion
iti04512
ECM-receptor interaction
iti04820
Cytoskeleton in muscle cells
iti04926
Relaxin signaling pathway
iti04933
AGE-RAGE signaling pathway in diabetic complications
iti04974
Protein digestion and absorption
iti05146
Amoebiasis
iti05165
Human papillomavirus infection
iti05200
Pathways in cancer
iti05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101954822 (Col4a4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101954822 (Col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101954822 (Col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101954822 (Col4a4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
101954822 (Col4a4)
09154 Digestive system
04974 Protein digestion and absorption
101954822 (Col4a4)
09158 Development and regeneration
04382 Cornified envelope formation
101954822 (Col4a4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
101954822 (Col4a4)
09162 Cancer: specific types
05222 Small cell lung cancer
101954822 (Col4a4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
101954822 (Col4a4)
09174 Infectious disease: parasitic
05146 Amoebiasis
101954822 (Col4a4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
101954822 (Col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
iti04147
]
101954822 (Col4a4)
00536 Glycosaminoglycan binding proteins [BR:
iti00536
]
101954822 (Col4a4)
Exosome [BR:
iti04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101954822 (Col4a4)
Glycosaminoglycan binding proteins [BR:
iti00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101954822 (Col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101954822
NCBI-ProteinID:
XP_021582811
LinkDB
All DBs
Position
Unknown
AA seq
1682 aa
AA seq
DB search
MVSLRWTKPLVTDPGYLILILFSVQHVYGGGKKYIGPCGGRDCSICQCFPDKGSRGQPGP
LGPQGPIGPLGPPGPIGIPGEKGLRGDVGLPGAAGEKGDKGPTGVPGFPGLDGVPGHPGP
PGSRGKPGLNGYNGSRGDPGFPGERGAPGLGGPPGLPGEYGEKGDSVFILGIIKGIQGDR
GDPGPPGLPGPRGTRGPAGPMGYPGAPGLVGLPGHPGNPGLKGNPGVGVKGQMGDPGEVG
HQGFPGPTLLIEPPDSSLFKGEKGIKGIRGMTGLPGPPGHKGEPGIGEKGEKGIPGFPGP
RGDPGSYGSPGFPGLKGEQGPVGDPGLFGFLGPKGDPGDRGYPGPPGVLVTPSLPLKGPP
GDPGFPGRYGEMGAVGPPGPPGHPGRPGDTCPGMVGPPGPPGFPGPPGFPGLAGIPGRPD
SAPGKPGRPGLPGQAGAPGLQGPPGSDAIYCSAGHPGPPGIKGKVGPPGGRGSKGEKGNE
GLCACQPGPVGPPGPPGLPGRQGSKGDLGLPGFLGERGDPGLPGPEGSPGPPGKPGALGR
PGDKGAKGDMVVSRVKGHKGERGPDGPPGFPGEHGQHGQDGHAGEKGDPGPRGDHEDAAP
GGKGFPGLPGSPGKAGPVGPPGLGFPGPPGERGPPGVPGHPGLRGPSGLKGQKGDTILCN
VTYPGRPGSPGFDGPPGPKGFPGPPGAPGPRCPDGQKGRRGKPGIPEIPGPPGFRGDMGD
PGLGGEKGSSLIGPPGLPGPPGVKGRKGIPGDPAFGPPGPPGDRGLSGVPGMKGTKGQPG
CPGAEGVVGVPGLPGLKGPKGRGGISGFPGIPGEPGHSCERGAPGIPGQPGLPGAPGSPG
APGWKGQQGDMGPPGPAGMKGLPGLPGLPGADGLPGPPGIPGPFGEDGLPGLPGPKGPQG
LPGFVGFPGERGKPGPEGQRGRKGETGDKGWPGFPGEQGARGVKGARGPPGNEGEMAIIS
QKGKPGEPGPPGDNGFRGERGDTGSPGMQGRRGEPGRYGPPGFHRGEPGPNGQHGLPGPP
GPPGSPGLRGIIGFPGFPGEQGEPGYPGPPGFSGIDGARGPKGSKGEPASQRGPPGPKGD
PGSPGCQGHVGAPGDQGLPGVQGLKGPPGKPGLPGSLGPLGCPGDQGMPGQKGHPGERGE
PGSTGLQGDPGLPGPPGIKGPSGSPGLDGLHGLKGQKGSKGTSGLHEMGPPGPVGLPGLK
GETGDPGSPGISPPGLFGEKGPPGPPGRPGPPGPAGVPGRPPKGDIPDPGPPGDQGPPGP
DGARGAPGPPGPPGSVDCLRGEPGDCGLPGPPGPPGPPGPPGCQGVPGCDGKDSQKGPMG
FPGPPGPPGLLGPPGEKGLPGPPGRKGPTGPPGPRGEPGPPADVDACPRIPGLPGVPGTR
GPEGAVGLPGQRGPPGLGCKGEPGLDGRRGNDGVPGPPGPPGHKGDAGEAGCPGAPGPPG
SPGDPGPRGVGPGYLSGFLLVLHSQTAQEPSCPVGMPQLWTGYSLLYLEGQEKAHNQDLG
LAGSCLPMFSTLPFAYCNIHQVCHYARRNDKSYWLASAAPLPMMPLAEEDIRPYISRCAV
CEAPAQAVAVHSQDQTIPPCPRAWRSLWIGYSFLMHTGAGDQGGGQALMSPGSCLEDFRA
APFLECQGRQGTCHFFANEYSFWLTSVKPDMQFSSAPSPDTLKEGQAQRQKISRCQVCVK
YS
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atggtgtctctcagatggaccaagcccttggtcacagatcccgggtaccttatacttatt
ctcttttctgtacaacatgtatatggaggtgggaagaaatacatcggtccttgtggagga
agagattgctccatttgccagtgctttcctgataagggctctcggggtcaaccaggacca
ctagggccacagggtccaatagggcccttggggccccctgggcccattgggattccagga
gagaaaggactgagaggtgacgttggccttccaggagcagcaggggagaaaggagataag
ggtccaactggtgttcctggatttccaggtttggatggtgtacctggtcacccagggcct
cctggctccagaggcaaacctggcttgaatggctacaatggctcaagaggtgatccaggg
ttcccaggagaaagaggagctcctggcttgggaggccccccaggccttcctggagaatat
ggagaaaaaggagattcagtgttcattttaggtatcattaaaggtattcagggagacaga
ggggacccaggaccacctggcttaccaggacctaggggtacaagaggaccagctggcccc
atgggatatcctggagcaccggggttagtgggacttccgggccatcctgggaatccaggt
ttgaagggcaatcctggtgtaggagtgaaaggtcagatgggagacccgggtgaggttggc
catcaaggttttcctggacccaccttattgatagagccccctgattctagtctcttcaaa
ggagaaaagggtataaaaggaattcgtggaatgactggattgccaggaccaccaggacat
aagggagagcctggtattggtgaaaaaggagagaagggtattcctggattcccaggacct
cggggtgaccctggttcctacggatctccaggttttccaggattaaagggagaacaagga
ccagttggagatcctgggctatttggatttcttggcccaaagggggatcctggagaccgt
gggtaccctggaccaccaggtgttttggtaactccgtctcttccactcaaaggtcctcca
ggggacccagggttccctggccgctatggagaaatgggggctgttggaccacctggtccc
ccaggtcatcctggcagaccaggggacacttgtccaggcatggtgggaccccctgggcca
ccggggtttcctggtcctcctgggtttcctgggctagctggaattcctgggagaccggac
tctgccccaggaaagccggggaggccaggactacctggccaggctggagctccagggctg
cagggacccccaggatcagatgccatatattgtagtgctgggcacccaggaccgccagga
ataaagggcaaagtaggtcccccaggaggaagaggctcaaaaggagaaaaaggaaatgaa
ggactctgtgcctgccaacctggtcctgtgggcccgcctggccctccaggacttcctggg
aggcaagggagcaaaggagacttaggactgcctggctttcttggagaaagaggtgaccca
ggccttcctggtcctgaaggatctccagggccaccaggaaaacctggtgctttgggacgc
cctggtgacaaaggagccaagggtgacatggttgtatccagagttaaagggcacaaagga
gaaagagggcctgatgggcccccagggtttccaggagagcacggacaacatggtcaggat
ggacatgctggagaaaagggggatccgggaccccggggggatcatgaagatgcagcccca
ggtggtaaaggttttcctggactaccaggctcccctgggaaagcaggacccgtggggcct
ccaggactcggatttcctggtccaccgggagagagaggtccaccaggagttccaggccac
ccaggtctgaggggtccctctggcttgaaggggcagaaaggtgacaccatcctttgtaat
gtaacctatcctgggaggccaggctctccgggttttgatggacctccaggtccgaaggga
tttccaggtcctccgggggctcctggaccaaggtgtccggatgggcagaaaggccgacgg
ggcaaaccaggaataccagaaataccaggtccacctggttttcgtggtgacatgggtgat
ccaggcttgggaggtgaaaagggatcctcccttattgggcccccgggccttcctgggcca
cctggagtgaaaggtcggaaaggaattcctggagatcctgcatttggccccccaggaccc
cctggagacagaggtctttcaggagttccagggatgaaaggaaccaaaggccaacctgga
tgcccaggggcagaaggggtagttggtgttcctggactcccaggtctgaaaggtcccaaa
ggcagaggaggaatttctggatttccaggtatcccaggggagcctggtcattcctgtgag
agaggtgcaccaggaattccaggccaaccaggacttcctggggctccaggtagtccaggt
gccccaggttggaaagggcagcaaggagatatggggcctcctgggccagctggaatgaaa
ggcctccctgggctcccaggattgccaggggcagatggactcccaggacctccaggaatc
ccaggaccctttggggaagatgggctgcctggtcttccaggcccaaagggaccccagggg
ctgcctggcttcgtaggttttcccggagagagaggaaagccaggtcctgaaggacaacgt
ggcagaaagggagagactggagacaagggctggcctggcttcccgggagagcagggggca
agaggtgtcaaaggagcaagaggacctcctggaaatgaaggagagatggccatcatttcc
caaaaggggaaacctggtgaacctgggcctcctggggataatggcttccgaggagagaga
ggtgatacaggaagtcctggaatgcaagggagaagaggagagccaggaagatacggccca
cctggattccacagaggggagcctggtccaaatgggcagcatgggcttcctggacctcct
ggtcctccaggctcacctggcctaagagggatcattggctttccagggtttccaggagag
cagggtgagccgggctatccaggcccccctggattttcaggaattgatggagcaagagga
cctaaaggaagcaaaggtgagcctgccagccagcgtggcccacctggtcctaagggtgac
ccaggcagccctggatgtcaaggacatgttggagcccctggagatcaaggcctgcctgga
gttcaaggactgaaaggaccaccaggaaagccaggcctgcctggctctttgggaccacta
gggtgtccaggtgatcaggggatgcctgggcagaagggccatccaggagaaaggggagag
cctgggtccacaggtctccagggggatccagggctaccaggacctccaggaataaaaggt
ccttcggggtctcctggcctggacggcttgcatggtttgaagggtcagaaaggaagcaaa
ggtacctcaggtttacatgaaatgggcccacccggtccagtgggactccctgggctgaaa
ggggagacaggagaccctggaagcccaggaatttctcctcctggcctttttggtgaaaaa
ggtcccccaggtcccccagggagacccggaccacctggtccagcaggcgttccaggaaga
cctcctaagggtgacattcctgacccaggtccacctggagatcagggacctcctggccct
gatggtgcaagaggagcacccgggcctccagggcctcctgggagtgttgactgcctgaga
ggggaaccaggtgactgtggactgccggggccaccggggccaccaggtcccccaggccct
ccagggtgccagggtgttccaggatgtgatggaaaagacagccaaaaaggaccaatgggg
tttccagggcctccagggccacctggtcttctggggccacctggagagaagggtttacct
ggacctccaggtagaaaagggcccacaggtcctccaggtcccagaggtgaaccagggcca
cctgcagatgtggatgcctgtccccggatcccagggcttcctggagtgccaggcacaaga
ggaccagaaggagctgtggggctcccaggacagagaggccccccgggactagggtgcaaa
ggagaacctggcctggatggcaggaggggcaatgatggtgtccctgggcctcctggacct
cctggacacaaaggtgatgctggagaggctggttgccctggagccccaggccctcctggt
tcccctggtgatcctgggcccagaggagttggccctggatacctcagtggcttcctccta
gtactccacagtcagacagctcaagaaccctcctgtcctgtgggcatgccccagctctgg
accgggtatagtctgttatacctggaaggccaagagaaagctcacaatcaagaccttggt
ctggcggggtcttgccttccgatgtttagcaccctgccctttgcctactgcaacatccac
caagtgtgccactacgcccggaggaacgacaagtcctactggctagccagcgcagcgccc
ctccccatgatgcccctcgcagaggaggacatccgcccgtacatcagccgctgtgccgtg
tgcgaggcccccgcacaggcggtggcggtgcacagccaggaccagaccatccccccgtgt
ccacgggcctggaggagcctctggatcgggtactccttcctgatgcacacaggagctggg
gaccaaggaggagggcaggccctcatgtcgcctggcagctgcctggaagatttcagagcg
gcaccgttccttgaatgccagggccggcagggaacttgccactttttcgcaaatgagtac
agcttctggctgacgtcggtgaaaccagacatgcagttttcctccgccccctcaccagac
accttgaaagaaggccaggcccagcgccagaaaatcagcaggtgccaggtctgtgtgaag
tatagctag
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integrated database retrieval system
