Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101955006
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Entry
101955006 CDS
T10664
Symbol
Pcdh9
Name
(RefSeq) protocadherin-9 isoform X3
KO
K16498
protocadherin delta 1
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
101955006 (Pcdh9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
iti01009
]
101955006 (Pcdh9)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
iti04515
]
101955006 (Pcdh9)
Protein phosphatases and associated proteins [BR:
iti01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
101955006 (Pcdh9)
Cell adhesion molecules [BR:
iti04515
]
Cadherins
Protocadherins
101955006 (Pcdh9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
MAP17
Big_9
V_ATPase_I
RCR
EphA2_TM
DUF6249
7tm_3
DUF6377
Motif
Other DBs
NCBI-GeneID:
101955006
NCBI-ProteinID:
XP_021584668
LinkDB
All DBs
Position
Unknown
AA seq
1237 aa
AA seq
DB search
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDIDTGMNAELKYTIVSG
NNKGLFRIDPVTGNITLEEKPATTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKSD
NIPVTPQNCPSSAGFHIQESEESHYESQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLI
SHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSD
NCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLVNGHTLTRAWKEDSNRNQFNDRKQFGS
NEGHFNNGSHMTDIPLANLKSYKQAGGAIESPKEHQL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggatttttacctgttggctgctctgattgcctgtttaaggctggattcc
gcaatagctcaagaacttatttacactattagagaggaattgcctgaaaatgtgcccata
ggaaacataccaaaggatctgaacatttctcacatcaatgctgccacagggacgagtgcc
agccttgtctacagactggtttctaaagctggggatgcccctttggtgaaagtatccagc
agcactggggaaattttcacaacctccaatagaatagacagagaaaaactctgtgctgga
gcttcttatgctgaggagaatgagtgcttctttgaacttgaggtggtgatcctccccaat
gactttttcaggctgatcaaaataaagataattgtcaaggataccaatgataatgccccc
atgtttccatctcctgtcatcaatatttccattccagaaaacactttgatcaacagccgc
tttccaattccatcagcaacagatcctgacacaggcttcaatggtgtacagcattatgaa
ttgctaaatgggcagagtgtttttggactggatatcgtggaaactccggagggagagaag
tggccacaattgattgttcagcaaaacttggatagagaacagaaagatacctatgtgatg
aaaatcaaagtggaggatggaggcactccacagaaatccagcacagccatactgcaggtc
acagtaagtgatgtaaatgacaacaggccagtgtttaaagagggtcaagtggaggtgcat
attccagagaatgctcctgtaggtacctctgtaattcagctccatgccactgatgcagat
ataggcagcaatgctgaaatccggtacatttttggtgcccaggtcgcccctgcaaccaaa
agactctttgctttaaataatactaccgggctgattacagttcagaggtctttagataga
gaagaaacagccattcacaaagtgacagtgctggctagtgatggcagctccactcctgct
cgagcaacggttaccatcaatgtcactgatgtaaatgataaccctccaaacatagacctc
aggtacattataagtcccatcaatggcactgtgtatttatctgagaaagatcctgtcaat
acaaagattgccctaattacagtttctgataaggacacagatgtgaatggcaaagtgatc
tgttttattgaaagagaggtcccctttcacttgaaggcagtctatgacaaccaatatttg
ttagagacctcttctttgttggactatgagggcaccaaagaattcagctttaaaattgtt
gcctctgattctgggaagcccagtttaaatcagactgccctggtaagggttaagcttgag
gatgaaaatgacaacccaccaattttcaaccagcctgtaattgagctgtcagtttctgaa
aacaaccgacgtgggttatacttaacaactattagtgccacagatgaagacagtgggaaa
aatgcagacattgtttatcagcttggaccgaatgcctccttctttgatctggaccgaaag
acaggagttttgacagcctccagggtctttgacagagaagaacaagaacgattcattttt
acagtaactgccagggacaatgggacccctcccctccaaagccaagcggctgtgatagtt
actgttctggatgagaatgacaatagccccaagtttactcataatcactttcaatttttt
gtgtctgagaatctgccaaagtatagtactgtgggggtaatcacagtgacagatgcagat
gctggagagaataaagctgtgactctttccattctaaatgacaatgataattttgtgctg
gatccttattctggagtcataaagtcaaacgtctcatttgatagagaacagcagagttcc
tacacttttgacgtcaaagccactgatggaggacaaccacctcgttcctctactgcaaaa
gtaactatcaacgtcatggatgtgaatgacaacagtccagttgtcatctctccaccatct
aacacttcctttaagttggtgcccctctcagccatccctggctccgtggtagcagaagtt
tttgcagtggatattgatactggaatgaatgcagaacttaagtatacaatagtgagtggg
aacaacaaaggcttatttcggatcgatcctgtaacaggtaacatcaccctagaagaaaag
ccggcaactaccgatgtgggcttacaccgtttggtggtcaacattagtgatctggggtac
cccaagtctttgcacacacttgtgctggtatttctttatgttaatgacactgctggaaat
gcctcctatatctatgacttgatccgcaggactatggagaccccactggacaggaacata
ggggatagcagccagccctatcaaaacgaagactatctcaccatcatgattgccatcgtc
gcaggggccatggtggtcattgttgtaatttttgtcactgttctggtgcgctgtcgccat
gcgtccaggttcaaagcagctcagaggagcaagcaaggtgctgaatggatgtccccaaac
caggagaataaacaaaacaagaaaaagaaaaggaagaaaagaaagtctcccaagagctct
cttttgaactttgttactatcgaagagtccaaacctgatgatgcagttcatgaacctatc
aatgggacaataagcctgccagctgagcttgaggagcaaagtataggaagatttgactgg
ggcccagcacctccaacaaccttcaagcctaacagccctgacctggccaagcactacaaa
tctgcctctccacagcctgcttttcatctcaaaccagacactccagtttccgtgaaaaag
caccatgtgattcaggagctccctttggacaacacctttgtcgggggttgtgacaccctt
tccaaacgctcttccactagttcagatcacttcagtgcctcagagtgcagttcccaagga
ggcttcaagacaaagggccccttacacaccagacagtgtaactcacacagcaaaagtgac
aatattcctgtcactcctcagaattgtcccagctctgcgggtttccacattcaggagagt
gaagaaagccattacgagtcgcagcgccgtgttacctttcacctccccgatggctcccag
gaaagctgcagtgacagtggtcttggagaccacgagccggtgggtagtggaaccctgatc
tcacaccctcttcctctggttcagccacaggacgaattctacgaccaggcttctccggac
aagaggacagaggcagatggcaattccgatcccaactctgatgggcctctgggtcccaga
ggattagctgaggcaacagagatgtgcactcaagaatgcttggttttgggtcattctgat
aactgctggatgcctcctggattgggtccatatcaacacccgaaatctcctctctcaacc
tttgcaccccagaaagaatgggtcaagaaagacaagcttgtgaatgggcacactctgacc
agagcctggaaagaagatagcaacagaaaccagttcaatgaccgtaagcagtttggctcc
aacgaaggccatttcaacaatggaagccacatgacagacattcctctggcaaatctgaag
tcttacaagcaagcaggaggtgcgattgagagtcctaaggagcaccaactctaa
DBGET
integrated database retrieval system
