Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101955307
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Entry
101955307 CDS
T10664
Symbol
Vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X2
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
101955307 (Vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
iti04131
]
101955307 (Vps8)
Membrane trafficking [BR:
iti04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
101955307 (Vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
zf-RING_Vps41
TPR_Vps41
WD40_CDC20-Fz
zf_RING_Vps8_fungal
zf-RING_11
Clathrin
zf-RING_2
zf-C3H2C3
zf-RING_5
Beta-prop_WDR3_1st
zf-RING_UBOX
Beta-prop_WDR5
GED
zf-C3HC4
EIF3I
PHD
Motif
Other DBs
NCBI-GeneID:
101955307
NCBI-ProteinID:
XP_013216518
UniProt:
A0A287DA27
LinkDB
All DBs
Position
Unknown
AA seq
1428 aa
AA seq
DB search
MENEPDHENVEQNLCAKTTEEELNKSFNLEASLSKFSYIDLDKELEFKNDLIDDKEFDIP
QVDTPPTLESILNETDDEDESFVLEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKK
KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFDQ
NQALRLCLGNTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHP
PGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLH
SKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVH
NYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTVVLLDSVE
KLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGG
QIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDASKRK
AVVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRKDLLFSQMY
DKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVHFQDKKLMENVESLIVHMDIT
SLDIQQVVLMCWENRLYDAMIYVYNRGMNEFIRPMEKLFRVIAPPLNAGKTLTDEQVVMG
NKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASPEEEIYPYVRTLLH
FDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQL
AKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEK
AEFYQICEFMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWKKAM
DHIEELVSLKPCKAAELVATHFSGQIEVVIKKLQNQVLLFKFLRSLLDPREGIHVNQELL
QISPCITEQFIELLCQFNPNQVIETLQVLECYRLEETIQITQKYQLHEVTAYLLEKKGDI
HGAFLIMLERLQSKLQEITTHQGEKNTRELASLKDVEDTMVDTIALCQRNSYNLNQQQRE
ALWFPLLEAMMAPQKLSSSAAPPLLSEALKSLTMQVLNSMAAFIALPSILQRILQDPVYG
KGKLGEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSI
CLQQYKRRQEMADEIIVFSCGHLYHSFCLQNKECTIEIEGQTRWTCYKCNSSKQVGKPSE
NSSEIKKGRITPSQVKMSPSCHQSRGDPAAKKATSEPVLDPQQIQAFDQLCHLYRGSSRL
ALLTELSQNRSSEGYRPFSGSQSGPAFNSIFQNENFQLQLIPPPVTED
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgaaccagaccatgagaatgtggaacagaacctttgtgccaagactactgaa
gaagaattgaataagtcttttaatctagaagcttcactttcaaagttctcttacatagat
ctggacaaggaactggaattcaaaaatgatctgattgatgacaaggaatttgatattcct
caagttgatactcctccaacactggaaagcatactgaatgagactgatgatgaagatgag
tcttttgttcttgaggatcctacattgctaaacattgatactattgattctcattcctat
gatacttcatctgtggcaagctcagatagtggtgacaggaccaacttaaaaaggaaaaag
aaattacctgattctttttcactccatggatcagttatgcgacattcacttctgaaggga
atttctgcccagatagtgtctgcagctgacaaagtagatgctggcttgcctacagcaatt
gcagtgtccagtttgatagccgtgggtacatctcatggattggctttaatatttgatcag
aatcaagcattgcgactctgcctgggtaacacaagtgttggaggtcagtatggagccatc
tctgccctcagtatcaataatgactgctcaagacttctttgtggctttgctaaaggacag
atcaccatgtgggatttggcgagtggaaaacttctcagatcaataacagatgctcatcct
ccaggaacagcaatactgcatatcaagtttacagatgatccaactcttgccatttgcaac
gacagtggtggctctgtttttgaattgacgtttaagagagtaatgggagtgagaacttgt
gaatctcgatgtctcttcagtggttccaagggtgaagtttgctgtattgagcccctgcat
tctaagcctgaattgaaagatcatcccatcacgcagttttcattactggccatggcatcc
ttaacaaagattctggtcattggattgaaaccatccttgaaagtatggatgacttttccc
tatggacggatggatccttctagcgttccattgcttgcctggcactttgtggctgtgcat
aattatgtgaatcccatgcttgctttctgcagaggagatgttgttcattttctactggtt
aagagagatgaatctggagccatacatgtgactaaacaaaagcaccttcacctatactat
gacctcatcaactttacttggataaactctcgtacagttgtgctcttagacagtgtagag
aaattgcatgtgattgatcggcagacacaagaagaactggaaacagtggagatctcagaa
gttcaattggtatataacagcagccatttcaagtcacttgccactggtggaaatgtcagc
caggctttggctttggttggagagaaggcttgttatcaatccatcagcagttacggtggt
cagatattttatttggggacaaaatctgtttatgtaatgatgctgaggagctggagagag
agagtggatcatctcctgaaacaagattgtcttacagaagccttggctcttgcatggtcc
ttccatgaaggaaaagcaaaagctgtagtgggattatcaggggatgccagtaaacgaaag
gctgtcgtggcagatcggatggtagaaatcctattccactatgcagatagagctctgaaa
aagtgcccagaccaggggaaaatccaagtgatggagcagcactttcaggatatggtacct
gtcatagttgattactgccttctgctgcagcgaaaggatcttttatttagccagatgtat
gacaaattaagtgagaattcagtggccaaaggagtgtttctggagtgccttgaaccatat
attttgagtgataaattggtggggatcacaccccaggttatgaaagacttgattgttcat
ttccaagataaaaaattaatggaaaatgtggaatccctcattgtacatatggatatcacc
agcctagatattcagcaggtagttctcatgtgctgggaaaatcgtctatatgatgctatg
atctatgtctataacagaggcatgaatgagtttattagaccaatggagaagcttttcaga
gtcattgctcctcctctgaatgcaggaaaaacactaacagatgagcaagttgttatgggc
aacaagcttcttgtatatattagttgttgtctggcaggtcgagcctatccccttggtgat
atccctgaagatcttgttcctttggttaaaaaccaggttttcgaatttctgattcgccta
cattcggcagaagcatcccctgaggaagaaatctatccttatgttcggactttgctacat
tttgacacaagagaatttctaaatgtattggcactgacttttgaagattttaaaaatgac
aagcaagctgtggaatatcaacaacgcattgtggatattttgttgaaagttatggtggag
aattcagattttactccctcacaagttgggtgtctctttacgttccttgctcgacagctt
gcaaaacctgacaataccttatttgtgaacagaaccctctttgatcaggtacttgaattc
ctctgtagtcctgatgatgactcccgacactctgaaagacagcaggttcttttagaattg
ctgcaggctggaggtattgttcaatttgaagagagtcggctcatccgtatggcagaaaaa
gctgaattctatcaaatttgtgaatttatgtatgagcgagaacaccaatatgacaaaatt
attgattgctacttgcgtgacccactgagagaggaagaagtctttaattacattcacaac
atcttatccattcctggccacagtgccgaggagaagcagtctgtgtggaagaaagcaatg
gaccatatagaggaactggtatccctgaagccctgtaaagctgctgagttggttgctacc
cacttttctggacagattgaagtagtcattaaaaaacttcagaaccaggttttacttttc
aaatttttgaggagtcttcttgaccccagggaaggtattcatgtaaatcaagaattgcta
caaatatctccctgtattacagagcagtttattgagcttttgtgtcagttcaacccaaac
caagtcatagagacactacaagtccttgagtgctaccgcctagaagaaactattcagatt
actcaaaagtatcaactccatgaagtcactgcttatttattggaaaagaaaggagatatt
catggtgcctttctaataatgctggagagactacaaagcaaactgcaagagataacaaca
catcaaggtgaaaaaaataccagagaacttgcctcactgaaggatgttgaagataccatg
gtagacacaattgctctttgccagagaaattcatataatttgaaccagcagcaacgagag
gcactctggtttccattattagaggcaatgatggcccctcagaagctgtccagttcagct
gcccctcctctactctctgaagctctgaagtctttgaccatgcaagttctaaacagcatg
gcagcatttattgcccttccatcaatcttgcaaagaatattacaggatccagtatatgga
aaaggaaaacttggagaaatccagggtcttattctgggaatgttagatacctttaactat
gaacaaaccctgcttgaaacaacaaccagccttctaaaccaagatctccattggtcattg
tgtaacctgagagcttctgtcactagaggattaaatcccaaacaggattattgctctata
tgtttgcaacagtataagagacgccaagaaatggccgatgaaattattgtctttagctgt
ggccatttgtatcattcattctgtctacaaaacaaagaatgcaccatcgaaattgagggc
caaacaagatggacgtgctacaaatgcaactcaagtaaacaagtaggaaaaccaagtgag
aattcatctgaaattaaaaagggaaggataacaccatcacaggtaaaaatgtctccatca
tgtcatcaatccagaggggatcctgctgctaagaaggcaacctcagaacctgttctggat
ccacaacaaatccaggcatttgatcagctttgccatctgtaccgagggagttccaggctg
gctctccttacggaactctcccagaatcgcagcagtgagggctacaggccgttcagtggc
tcccagagtggaccagccttcaacagcatctttcagaatgagaacttccagctgcagctc
attcccccacctgtaaccgaggactga
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integrated database retrieval system
