Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101955693
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Entry
101955693 CDS
T10664
Symbol
Col1a2
Name
(RefSeq) collagen alpha-2(I) chain
KO
K06236
collagen type I alpha
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04151
PI3K-Akt signaling pathway
iti04510
Focal adhesion
iti04512
ECM-receptor interaction
iti04611
Platelet activation
iti04820
Cytoskeleton in muscle cells
iti04926
Relaxin signaling pathway
iti04933
AGE-RAGE signaling pathway in diabetic complications
iti04974
Protein digestion and absorption
iti05146
Amoebiasis
iti05165
Human papillomavirus infection
iti05205
Proteoglycans in cancer
iti05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101955693 (Col1a2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101955693 (Col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101955693 (Col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101955693 (Col1a2)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
101955693 (Col1a2)
09152 Endocrine system
04926 Relaxin signaling pathway
101955693 (Col1a2)
09154 Digestive system
04974 Protein digestion and absorption
101955693 (Col1a2)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
101955693 (Col1a2)
09172 Infectious disease: viral
05165 Human papillomavirus infection
101955693 (Col1a2)
09174 Infectious disease: parasitic
05146 Amoebiasis
101955693 (Col1a2)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
101955693 (Col1a2)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
101955693 (Col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
iti00536
]
101955693 (Col1a2)
Glycosaminoglycan binding proteins [BR:
iti00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101955693 (Col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
101955693
NCBI-ProteinID:
XP_005331878
UniProt:
I3MG62
LinkDB
All DBs
Position
Unknown
AA seq
1366 aa
AA seq
DB search
MLSFVDTRTLLLLAVTSCLATCQSLQEGTAKKGPTGDRGPRGERGPPGPPGKNGEDGPNG
PPGPPGPPGPPGLGGHFAAQYDGKGVGMGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEP
GEPGQTGPAGARGPPGAPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIR
GHNGLDGLKGQPGAQGVKGEPGAPGENGTPGQAGARGLPGERGRVGAPGPAGARGSDGSV
GPVGPAGPIGSAGPPGFPGAPGPKGEIGPVGNPGPSGPAGPRGEVGLPGLSGPVGPPGNP
GANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNK
GEPGSAGPQGPPGPSGEEGKRGPNGEPGSAGPAGPPGLRGNPGSRGLPGADGRAGVMGPP
GNRGATGPAGVRGPNGDSGRPGEPGLMGPRGLPGSPGNVGPAGKEGPVGLPGIDGRPGPI
GPAGARGEAGNIGFPGPKGPTGDPGKSGDKGHPGLAGARGAPGPDGNNGAQGPPGPQGVQ
GGKGEQGPAGPPGFQGLPGPSGTAGEVGKPGERGIPGEFGLPGPAGPRGERGPPGESGAV
GPAGPIGSRGPSGPPGPDGNKGEPGVVGAPGTAGASGPGGLPGERGAAGIPGGKGEKGEP
GLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPPGPRGSPGERGEVGPA
GPNGFAGPAGAAGQPGAKGERGTKGPKGENGVVGPAGPVGAAGPSGPNGPPGPAGGRGDG
GPPGMTGFPGAAGRTGPPGPSGITGPPGPPGAAGKEGLRGPRGDQGPVGRTGETGASGPP
GFAGEKGPAGEPGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGIAGALGEPGPLGIA
GPPGARGPPGAVGSPGVNGAPGEAGRDGNPGSDGPPGRDGQPGHKGERGYPGNIGPAGAA
GAPGPHGTVGPAGKHGNRGEPGPAGSVGPVGAVGPRGPSGPQGVRGDKGEPGDKGPRGLP
GLKGHNGLQGLPGLAGQHGDQGSPGPVGPAGPRGPAGPSGPVGKDGRSGHPGSVGPAGVR
GSQGSQGPAGPPGPPGPPGPPGVSGGGYDFGYEGDFYRADQPRSSPSLRPKDYEVDATLK
SLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTG
ETCIKAQPEHIPAKNWYRSTKAKKHVWLAEIMNGGSQFEYNVEGVTSKEMATQLAFMRLL
ANHASQNITYHCKNSIAYMDGETGSLDKAILLQGSNDVEFVADGNSRFTYTVLVDGCSKK
TNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEIGVDIGPVCFK
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacgcggactttgttgctgcttgcagtaacttcgtgcctagca
acatgccaatctttacaagagggaactgcaaaaaagggcccaactggagatagaggacca
cgtggagaaaggggtccaccaggccccccaggcaaaaatggtgaagatggccccaatggc
cctcctggtccacctggccctcctggcccccctggtcttggcgggcactttgctgctcag
tatgatggaaaaggagttggaatgggccctggaccaatgggtttaatgggacctagaggc
cctccaggtgcagctggagcccctggccctcaaggtttccaaggacctgctggtgagcct
ggtgaacctggtcagactggtcctgcaggtgctcgtggtccacctggtgctcctggcaag
gctggtgaggatggtcaccctggaaaacctggacgacccggtgagagaggagttgttgga
ccacagggtgctcgtggtttccctggaactcctggacttcctggcttcaagggcattagg
ggacacaatggtctggatggattgaagggacagcctggtgctcaaggtgtaaagggtgaa
cccggtgccccaggtgaaaatggaactccaggtcaagcaggtgcccgtgggcttcctggt
gagagaggacgtgtcggtgcccctggcccagctggtgcccgaggcagtgatggcagtgtt
ggtcccgtgggtcctgctggtcctattggatctgctggccccccaggcttcccaggtgcc
cctggtcccaagggtgaaattggacctgtgggtaaccccggtccttctggtcctgctggt
cctcgtggtgaagtgggtcttcctggtctttctggcccagttggacctcctggtaatcct
ggagccaatggccttactggtgctaagggtgccgctggtcttcctggtgttgctggggct
cctggcctccctggcccccgtggtattcctggtcctgttggtgctgctggtgctactggt
gccagaggacttgttggtgagcctggtccagctggctccaaaggagagagtggtaacaag
ggagagccaggttctgctggcccccaaggtcctcctggtcccagtggtgaagaaggaaag
agaggccccaatggtgaacctggatccgctggtcctgcaggacctcctggactgagaggt
aatcctggttctcgtggtcttcctggagctgatggcagagctggtgtcatgggacctcct
ggtaatcgtggtgcaactggccctgctggagttcgaggtcccaacggagactctggtcgc
cctggggagcctggtctcatgggacccagaggtcttcctggatcccctggaaatgttggc
ccagctggtaaagaaggtcctgtgggtctccctggtattgacggcaggcctggcccaatt
ggcccagctggagcaagaggcgaagctggcaacatcggattccccggacccaaagggccc
actggtgatcctggcaaaagtggtgataaaggtcaccctggacttgctggtgctcggggt
gctcctggtcctgatggaaacaatggtgctcaggggccccctggaccccagggtgtccaa
ggtggcaaaggtgaacagggtccggctggtcctccaggcttccagggtctgcctggcccc
tcaggtaccgccggtgaagttggcaaaccaggagaaaggggtatccctggtgaatttggt
ctccctggtcctgctggtccaagaggggaacgtggtcccccaggtgagagtggggctgtt
ggtcctgctggtcccattggaagccgaggtccttctggacccccagggcctgatggaaac
aagggtgaacccggtgtggttggtgctccaggcactgctggtgcatctggtcctggtgga
ctcccaggagagaggggtgctgctggcatacctggaggcaagggagaaaagggtgaacct
ggcctcagaggtgaaattggtaaccctggcagagatggtgctcgtggtgctcctggtgct
gtaggtgcccctggtcctgctggagctacaggtgaccggggtgaagctggtgctgctggt
cctgctggcccacctggtcctcggggtagccctggtgaacgtggtgaggttggtcctgct
ggtcccaatggatttgctggtcctgctggtgccgctggtcaacctggtgctaaaggagag
agaggaaccaaaggacctaagggtgaaaatggtgttgttggtcccgccggccccgttgga
gctgctggcccatctggtccaaatggtccccctggtcctgctggaggtcgtggtgatgga
ggaccccctggtatgactggtttccctggtgctgctggacgaactggtcctcctggaccc
tctggtatcactggccctcctggtccccctggtgctgctggtaaagaagggcttcgaggt
cctcgtggtgaccaaggtcccgttggccgaactggagaaacaggtgcatctggcccacct
ggctttgctggtgaaaagggtcccgctggagagcctggtactgctggacctcctggcacc
ccaggtcctcagggtcttcttggtgctcctggtattctgggtcttcctggctccaggggc
gaacgtggtctgccaggtattgctggtgctttgggtgaacctggtcctctgggcattgca
ggccctcctggggcccgtggtccccctggtgcagtgggcagtcctggagtcaatggtgct
cctggtgaagctggtcgtgatggcaatcctggaagtgatggtcctccaggtcgcgatggt
caacctggacacaagggagaacgcggttaccctggcaacattggtcctgctggtgctgca
ggtgcacctggtcctcatggcactgtgggtcctgctggcaaacatggaaaccgcggtgaa
cctggtcctgctggttctgttggtcctgttggtgctgtcggtccaagaggtcctagtggc
ccacaaggcgttcgaggtgacaagggagagcctggtgataaagggcccagaggtcttcct
ggcctaaagggacacaatggattacagggtcttccaggtctcgctggtcaacatggcgat
caaggttctcctggccccgttggtcctgctggccctaggggtcctgctggtccttctggc
cctgttggcaaagatggtcgctctggacatcctggtagtgtcggacctgctggtgttcga
ggatctcagggtagccaaggacctgctggccctcccggtccccctgggcctcctgggcct
cctggtgtaagcggtggtggttacgactttggttatgaaggagacttctacagggctgac
cagcctcgctcatcaccttctctcagacccaaggattatgaagtggatgccaccctgaag
tccctcaacaaccagattgagacccttcttactcctgaaggctctaggaagaacccagct
cgcacatgccgagacttaagactcagccacccagagtggagcagcggttactactggatt
gacccgaaccaaggatgcactatggatgctatcaaagtatactgtgatttctctactggt
gaaacctgcatcaaggcccaacctgaacacatcccagccaagaactggtacaggagcacc
aaggccaagaagcacgtctggttagcagaaattatgaatggtggtagccagttcgaatac
aatgtagaaggagtgacctccaaggaaatggctactcaacttgccttcatgcgcctgctg
gccaaccatgcctctcagaacatcacctaccactgcaagaacagcattgcatacatggat
ggggagactggcagtctggataaggctatccttctgcaaggctccaatgatgttgaattt
gttgccgatggcaacagcaggttcacttacactgttcttgtagatggctgctctaaaaag
acaaatgaatggggaaagacgatcattgaatacaaaacaaacaagccttctcgcttgccc
ttccttgatattgcacctttggacatcggtggcgctgaccaagaaattggtgtggacatt
ggcccagtctgtttcaaataa
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integrated database retrieval system
