Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101956019
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Entry
101956019 CDS
T10664
Symbol
Col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04151
PI3K-Akt signaling pathway
iti04382
Cornified envelope formation
iti04510
Focal adhesion
iti04512
ECM-receptor interaction
iti04518
Integrin signaling
iti04820
Cytoskeleton in muscle cells
iti04926
Relaxin signaling pathway
iti04933
AGE-RAGE signaling pathway in diabetic complications
iti04974
Protein digestion and absorption
iti05146
Amoebiasis
iti05165
Human papillomavirus infection
iti05200
Pathways in cancer
iti05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101956019 (Col4a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101956019 (Col4a1)
04518 Integrin signaling
101956019 (Col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101956019 (Col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101956019 (Col4a1)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
101956019 (Col4a1)
09154 Digestive system
04974 Protein digestion and absorption
101956019 (Col4a1)
09158 Development and regeneration
04382 Cornified envelope formation
101956019 (Col4a1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
101956019 (Col4a1)
09162 Cancer: specific types
05222 Small cell lung cancer
101956019 (Col4a1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
101956019 (Col4a1)
09174 Infectious disease: parasitic
05146 Amoebiasis
101956019 (Col4a1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
101956019 (Col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
iti04147
]
101956019 (Col4a1)
00536 Glycosaminoglycan binding proteins [BR:
iti00536
]
101956019 (Col4a1)
Exosome [BR:
iti04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101956019 (Col4a1)
Glycosaminoglycan binding proteins [BR:
iti00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101956019 (Col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101956019
NCBI-ProteinID:
XP_005317186
LinkDB
All DBs
Position
Unknown
AA seq
1804 aa
AA seq
DB search
MPPGGRSHLGFGRQGLLPTRIGPSRSARRGTTPAPLASLGAGLRGPGVRSRSSARTQGSG
DPGARAPECRVWSTGAPIRGKRNSRAARSRRLSPALQGPPLRDAARALPRGGGGANKLSS
SGRAQVSAPSRRARDGAQRSHPSPPRVALLLHEERSRAAAKGGCDGSGCGKCDCHGVKGQ
KGERGLPGLQGVIGFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGAAGYPGNPGL
PGIPGQDGPPGPPGIPGCNGTKGERGPLGPPGLPGFSGNPGPPGLPGMKGDPGEILGFGY
VPGMLLKGERGFPGAPGIPGSPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGSSFQ
GPKGDKGDQGVSGPPGMPGQAQVKEKGDFAPTGEKGQKGEPGFQGIPGIGEKGEPGKPGP
RGKPGKDGDKGEKGSPGFPGEPGYPGLPGPQGPQGDKGAAGPPGPPGIVIGTGPLGEKGE
RGYPGAPGLRGEPGPKGYPGLQGQPGPPGFPVSGQPGAPGFPGERGEKGDQGYPGTSLPG
LSGKDGVPGPPGLPGPPGQPGHTNGIVECQPGPPGDQGPPGTPGQPGLTGEVGEKGQKGD
SCLICDTEGLRGPPGPQGPPGEIGFPGQPGAKGDRGLPGRDGLEGLPGPQGAPGLMGPPG
AKGEPGEIYFDMRLKGDKGDPGFPGQPGMPGRAGSPGRDGHPGLPGPKGSPGSVGLKGER
GPPGGAGFPGSRGDIGPPGPPGFGPIGPVGDKGQPGFPGNPGSPGLPGPKGEAGKVVPLP
GPPGAEGLPGSPGFPGPQGDRGFPGTPGRPGLPGEKGSVGQPGIGFPGPPGPKGVDGLPG
DVGTPGSPGRPGFNGLPGSPGLQGQKGEPGIGLPGLKGLPGLPGIPGTPGEKGNIGGPGV
PGEHGAIGPPGLQGIRGDPGPPGVQGPAGPPGAPGIGPPGVMGPPGGQGPPGSSGPPGVK
GEKGFPGFPGLDMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGIPGFPGPKGEMGVMG
TPGQPGSPGPAGAPGLPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMEKVDMGS
MKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGVSGTPGAPG
LPGPKGAVGGMGLPGTPGEKGVPGIPGPQGVPGLPGEKGAKGEKGQAGLPGVGIPGRPGD
KGDQGAAGFPGSPGEKGEKGSIGIPGMPGSPGPKGSPGSVGYPGSPGLPGEKGDKGLPGL
DGVPGVKGEAGLPGQPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGSKGDK
GSKGEVGFPGLAGSPGIPGPKGEQGFMGPPGPQGQPGLPGTPGRPVEGPKGDRGPQGQPG
LPGLPGPMGPPGLPGLDGLKGDKGNPGWPGAPGIPGPKGDPGFQGMPGIGGSPGLTGSKG
DMGPPGVPGFQGQKGLPGLQGLKGDQGDQGVPGPKGLPGPPGPPGPYDIIKGEPGLPGPE
GPPGLKGLQGPPGPKGQQGVAGSVGLPGPPGAPGFDGAPGQKGETGPFGPPGPRGFPGPP
GPDGLPGSMGPPGTPSVDHGFLVTRHSQTTDDPSCPPGTKILYHGYSLLYVQGNERAHGQ
DLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDNIRPFI
SRCAVCEAPAMVMAVHSQTIQIPQCPNGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCL
EEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVC
MRRT
NT seq
5415 nt
NT seq
+upstream
nt +downstream
nt
atgccgcctgggggtcgctctcacctcgggttcggtcgtcaggggctgctgcctacgcgc
attggcccctccagaagcgcccgccgcggcacaacaccagcgccgctggcctcgctgggc
gctggcctccggggcccgggcgtccgctcgcggtcctcggcccggacccaaggctcaggg
gatccgggcgctagagcccctgagtgcagagtgtggagcactggtgccccgattcgcggc
aagcgcaattcccgagctgcgcgctcccgccgcctctcacccgccctgcagggtcctccc
cttagagacgccgcccgcgccctgcctaggggagggggcggcgccaacaaattgagctcg
agcggccgcgcgcaagtctccgctccgagccgccgcgcccgggacggtgcgcagcgctca
caccccagccctccgagagtcgcccttctgctccacgaggagcgcagccgggccgctgcg
aagggtggttgtgatggctctggctgcggaaaatgtgactgccatggagtgaagggacaa
aagggggaacgaggtctcccagggctacaaggtgtcattgggtttcctggaatgcaagga
cccgaggggccgcagggaccaccgggacagaagggtgatactggagaacctggacttcct
ggcacaaaagggacaagaggacccccaggagcagctggctacccgggaaacccaggactt
ccgggtattcctggccaagatggtcccccaggtcccccaggtatcccaggatgcaacggt
accaaaggagagagaggaccacttgggcctcctggtttgcctggattctctggaaatcct
ggaccaccagggttacctggaatgaagggggatccaggtgaaatactgggcttcggctac
gtgcctgggatgctgttgaaaggggaaagaggatttcctggcgcccccgggattccaggc
tcgccgggattgccaggactgcagggacccgttggccctccaggatttactggaccacca
ggccccccgggtcctcctgggcctccaggtgaaaagggacaaatgggctcaagttttcaa
ggaccaaaaggtgacaagggtgaccaaggtgtcagtgggcctcccgggatgccaggacag
gcacaagttaaagaaaaaggggactttgccccgacgggagaaaagggtcaaaaaggtgaa
cctggatttcaggggataccagggattggcgagaagggcgaacccggaaagccagggcct
cggggaaaacctggaaaagatggtgacaaaggagagaaagggagtccgggctttccaggc
gagccagggtacccgggactccccggcccgcagggccctcagggagacaaaggtgcagcc
ggtcctccgggcccccctggaattgttataggcacaggacctctgggagaaaaaggggag
cgaggctacccaggggctcccgggctgagaggagagccaggcccgaaaggttacccggga
ttacaaggccagccgggccccccaggcttccctgtatctggacagcctggtgctcccggc
ttccccggagaaagaggagaaaaaggagaccaaggatatccaggaacatctttgccaggg
ctgagcggaaaggatggagtcccaggccccccaggtctccctggaccccctgggcagcca
ggacacacaaatggcatcgtggaatgtcagcctggaccacctggtgatcagggtcctcct
gggactccagggcagccagggttgacaggagaggtgggagaaaaaggtcagaaaggagac
agctgcctcatctgtgacacagaaggacttcgagggccgcccgggccacagggtccccca
ggagaaatcggttttccaggacagccaggggccaagggcgacagaggtctacccggcagg
gatggtcttgaaggattgcctgggcctcaaggtgcaccagggctgatgggcccgcccggc
gccaagggagagcctggcgagatttacttcgacatgcgactcaaaggcgacaaaggagac
cccggcttcccaggacagcccggcatgccagggagagcagggtcccctgggagagacggc
catccaggtcttccaggccccaagggttccccgggctccgtgggattgaagggagaacgt
ggtccccctggaggagctggctttcccggcagccgtggtgacatcggcccccccgggcct
cccggatttggtcctattggtcctgttggtgacaaaggacaaccaggttttcctggaaac
cctgggtcccctggcctgccaggtcccaagggtgaagcaggcaaggtggtccccttacct
ggacccccaggagcagagggcctcccagggtccccgggattcccagggccccaaggtgac
cgaggcttccctggaacccctggacggccaggcctcccaggagagaagggctctgtaggc
cagccggggattggatttcctgggcctcccggccccaaaggtgtcgatggcttacctgga
gacgtgggcactcccgggagtccaggtcgcccagggtttaatggcttacctggcagcccc
ggtttgcagggccagaagggagaacctggcattggtctgccaggactcaagggacttcca
ggtcttcccggcattcctggcacaccgggggagaaaggcaacatcggaggaccaggcgtt
cctggagaacacggggccatcggcccacctgggcttcaagggatcagaggtgaccccgga
ccccctggagtacaaggcccagcaggaccccctggagctcccggaataggcccccctgga
gttatgggcccgcctggagggcagggaccaccagggtcatcaggtccccctggagtgaaa
ggcgagaaaggcttccctggattcccaggcctcgacatgcccggccctaaaggagacaaa
ggctcccaaggacttcccggcctcacaggacagtcagggctgcctggcctccccggacag
cagggcacacctggaattccagggttcccaggtcccaagggagaaatgggtgtcatgggg
accccaggacagccaggctcaccaggacctgcaggtgccccaggactgcctggagaaaaa
ggggaccacggcttcccaggctcctcaggacccaggggggaccctggcttcaaaggcgac
aaaggggacgttgggctccctggaaaacccgggtctatggagaaagtggacatgggcagc
atgaagggacagaagggagaccaaggagaaaaaggacaaattggacccactggtgacaaa
ggatcccgaggagaccctgggacgccaggagtgcctgggaaggatgggcaggctgggcac
cccggacagccaggacctaagggtgaccccggcgtaagtggaacaccaggggctccagga
ctccctggaccgaaaggagcggttggtggcatgggcttgccaggaacacctggggaaaag
ggcgtgcctggcatccccggcccacagggcgtccccggcttgcctggagagaaaggggcc
aaaggagagaaggggcaggcaggtctgcccggcgttgggattcctgggcggcctggcgac
aagggagaccagggagcagcagggttcccgggaagccctggcgagaagggcgagaagggc
agcatcgggattccgggaatgccggggtctccgggccccaaggggtctccagggagcgtt
ggttacccaggaagccctgggttgcctggagagaagggtgacaaaggccttccaggactg
gacggtgtccctggtgtcaaaggagaagcaggtcttcctgggcagcctggccccacaggc
ccagccggacagaaaggggagccaggcagtgacggaattccaggatccgcaggagagaag
ggcgaaccaggtctaccaggaagagggttccccgggtttccagggagcaaaggagacaaa
ggttcaaagggagaagtgggtttccctggattagctgggagtcccggaattcctggaccc
aaaggcgagcaaggattcatgggccctccggggccccaaggacagccaggcttaccaggc
actcccggccgccccgtggagggacccaaaggggaccgaggacctcagggacaacctggc
ctgccagggcttccgggacccatggggcctccagggcttcctgggcttgacgggctgaag
ggtgacaagggaaatccaggatggccaggagcacccggcattccggggcccaagggagac
ccagggttccagggcatgccgggcattggcggctctcctggactcacaggttccaagggt
gatatggggcctccgggagttccaggatttcaaggtcaaaagggtcttcctggcctccag
gggctgaagggcgatcagggagatcaaggcgtccccggccctaaaggtctcccaggcccc
cctggccctccaggtccttacgatatcatcaagggggagccaggactccctggtcctgag
ggtccgccaggtctgaaagggctccagggccctccgggtcccaaagggcagcaaggtgtg
gccggctcggtgggcttgcctggacccccaggtgctcctggctttgacggtgcccctggc
cagaaaggagagacgggacctttcgggcctcctggtccaagagggtttcctggcccaccc
ggccctgatggattgccaggatccatgggacccccaggcaccccatccgtcgaccacggc
ttcctcgtgaccaggcacagtcagacaacagatgacccatcatgtcctcctgggaccaag
atcctttaccacgggtactcccttctctacgtgcaggggaacgagcgagcccacggccag
gatctgggcacggccggcagctgcctgcgcaagttcagcacgatgcccttcctgttctgc
aacatcaacaacgtgtgcaacttcgcctcccgcaacgactactcctactggctgtccacg
ccggagcccatgcccatgtccatggcgcccatcactggggacaacatccggccgtttatc
agcagatgtgccgtgtgcgaggcaccagccatggtgatggcggtgcatagtcagaccatt
cagatcccgcagtgccccaacgggtggtcgtcgctgtggattggctattccttcgtgatg
cacaccagtgctggtgctgaaggttctggccaagccctggcgtcccccggctcctgtctg
gaagagttcagaagcgcaccgttcatcgagtgccacggccgtgggacttgtaattactat
gcaaacgcttacagcttttggctcgccaccatagagagaagcgagatgttcaagaagccc
acaccatccaccttgaaggcaggggagctacgcacacacgtcagccgctgccaagtttgt
atgagaagaacataa
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integrated database retrieval system
