Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101956374
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Entry
101956374 CDS
T10664
Symbol
Rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04068
FoxO signaling pathway
iti05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
101956374 (Rag1)
09160 Human Diseases
09163 Immune disease
05340 Primary immunodeficiency
101956374 (Rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
iti04121
]
101956374 (Rag1)
Enzymes [BR:
iti01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101956374 (Rag1)
Ubiquitin system [BR:
iti04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101956374 (Rag1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAG1
RAG1_imp_bd
zf-RAG1
zf-C3HC4
zf-C3HC4_2
zf-RING_6
zf-RING_2
zf-RING_10
zf-C3HC4_4
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
101956374
NCBI-ProteinID:
XP_005327451
UniProt:
I3MY25
LinkDB
All DBs
Position
Unknown
AA seq
1043 aa
AA seq
DB search
MAVSLPPTLGISSAPDEIQHPHMKFSEWKFKLFRVRSFEKTTDETPKDKKDSLEGKPSLE
QSPAVLDKSGGPKPVLTQPALKGHPKFSKKSHDSGKARDQAVHQANLRHFCRICGNSFKT
DEHDRRYPVHGPVDAKTQVLLRKKEKRVTSWPDLIARVFRIDVKADVDSIHPTQFCQNCW
GIMHRKFSSAPREVYFPRNATMEWHPHTPSCDICHTARGGLKRKSHPPNLQLSKKLKTVL
DHARQARRRKRRAQARISSKEVMKKITNCNQIHLSTRLLAVDFPAHFVKSISCQICEHIL
ADPVETSCKHVFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSILNSLVVKCPA
EECNEEISLEKYNHHVSSHKESKETFVHINKGGRPRQHLLSLTRRAQKHRLRELKMQVKA
FADKEEGGDVKSVCLTLFLLALRARNEHRQADELEAIMQGRGSDLPPAVCLAIRVNTFLS
CSQYHKMYRTVKAITGRQIFQPLHALRNAEKILLPGYHPFEWQPPLKNVSSNTDVGIIDG
LSGLSSSVDDYPVDTIAKRFRYDAALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE
SCDGMGDVSEKHGSGPAVPEKAVRFSFTLMKISIAHGAQNVKVFEEAKPNSELCCKPLCL
MLADESDHETLTAILSPLIAEREAMKSSQLMLEMGGILRTFKFIFRGTGYDEKLVREVEG
LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK
GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL
RKKMNLKPIMRMNGNFARKLMTKETVEAVCELIPSAERHEALRELMDLYLKMKPVWRSSC
PAKECPESLCQYSFNSQRFAELLSSKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA
SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKSSGFTMN
SKANLGDPLGIEDSLESQDSMEF
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggctgtctccttgccgcccaccttgggaatcagttctgcacccgatgaaattcaacac
ccacatatgaagttttcagagtggaaatttaagctgttcagggtgagatcctttgaaaag
acaactgatgaaactccaaaggataaaaaggattccttggagggaaaaccttctctggag
caatccccagcagtcctggacaagtctggtggcccaaagccagtcctgactcaaccagct
ctgaagggccatcctaagttttcaaagaaatcccacgacagtgggaaagcaagagaccaa
gcagttcaccaagccaaccttcgacacttctgccgcatctgtgggaattctttcaaaacc
gatgagcacgacaggagatacccagtccatgggcctgtggatgctaaaacccaagtcctc
ttacgaaagaaggagaagagagtcacttcctggccagacctcatcgccagggttttccga
atcgacgtgaaggcagatgttgactcgatccaccccacccagttctgccagaactgctgg
ggcattatgcacaggaagttcagcagcgccccacgtgaggtttacttcccaaggaatgcc
accatggagtggcatccccacacaccatcctgcgacatctgccacactgcccgtgggggc
ctcaagaggaagagccatccgccaaacctgcagctcagcaaaaaactcaaaactgtgctg
gaccacgcgagacaagcccgtcggcgcaagagaagagctcaggcaaggatcagtagcaaa
gaggtcatgaagaagatcaccaactgcaatcagatccatctgagtaccaggctcctggcc
gtggacttcccagcacactttgtgaaatccatctcctgccagatttgtgagcacattctg
gccgaccctgtggagaccagctgtaagcacgtgttttgcaggatctgcattctcagatgc
ctcaaagtcatgggcagctattgcccctcttgccgatatccgtgcttccccaccgacctg
gagagtccagtgaagtccttcctgagcatcttgaattccctggtggtgaagtgcccagca
gaagagtgcaatgaagagatcagcttggaaaaatataatcaccatgtctcaagccacaag
gaatccaaagagacttttgtgcatattaataaaggaggcagaccccgtcaacatcttctg
tcactcactcgaagagctcagaagcaccggctgagggagctgaagatgcaagtcaaggct
ttcgctgacaaagaagaaggtggagatgtgaagtctgtgtgcctgactttattcctgctg
gctctgagggcaagaaatgagcacagacaagccgatgagctggaggccatcatgcagggt
cggggctctgatctgccgcctgctgtttgcttggccattcgtgtcaacaccttcctcagc
tgcagtcagtaccacaagatgtacaggactgtgaaagccatcacagggaggcagattttt
cagcctctgcatgcccttcgcaatgcagagaagatccttctgccaggctaccaccccttt
gagtggcagccacctctgaagaatgtgtcttcaaacaccgatgttggcattatcgatggg
ctgtctggactttcctcctcggtggatgattacccagtagacaccattgcaaagaggttc
cgctacgatgcagctttggtgtctgccttgatggacatggaggaagacatcctggaaggc
atgagatcccaagaccttgatgactacctgaatggtcccttcaccgttgtggtaaaggag
tcctgtgatggcatgggagatgtgagcgaaaagcatgggagtgggccagcggttccggaa
aaagcagttcgtttttcattcaccctcatgaaaatttcaatagcacatggcgcccagaac
gtgaaggtgtttgaagaggccaaacctaactctgaactgtgttgcaagcctctgtgcctc
atgctggcagatgagtctgaccacgagaccctgactgccattctgagccctctgattgcc
gagagggaagccatgaagagcagccaactgatgctggagatgggaggcatcctcaggacc
ttcaagttcatcttcaggggaactggatacgatgaaaaacttgtccgggaggtggaaggc
ctcgaggcgtctggctcagtctacatttgtacgctttgcgatgccacccgcttggaagcc
tctcaaaatcttgtcttccactccataaccagaagccatgccgagaatctggagcgctac
gaggtctggcgctccaacccgtaccacgagtcggtggaagaactgcgggatcgagtgaaa
ggggtctctgccaagcctttcattgagaccgtcccttccatcgatgccctccactgtgac
atcggcaatgcggctgagttctacaagattttccagctggagataggagaggtatataaa
aaccccaatgcctccaaggaggaaaggaaaagatggcaggccaccctggacaagcatctc
cggaagaagatgaacctcaagccaatcatgaggatgaatggcaactttgccaggaagctc
atgaccaaagagactgtggaggcagtgtgtgaattaattccttctgcagagaggcacgaa
gctctcagggagctgatggacctttacctgaagatgaaacccgtgtggcgctcctcgtgc
cctgctaaagagtgcccagagtccctctgccagtatagcttcaactcacagcgttttgct
gagctcctctctagcaagttcaagtatagatacgagggcaaaatcaccaactattttcac
aaaaccttggcgcatgtgcctgaaattatcgagagggatggctctatcggggcctgggca
agtgagggaaatgagtctggcaataaactctttaggcgcttccggaaaatgaatgccagg
cagtccaagtgctatgaaatggaagacgtcctgaagcaccactggctgtatacttccaaa
tacctccagaagtttatgaacgctcataatgcattaaaaagctctgggtttaccatgaac
tcaaaggcaaacttaggggacccattaggcatagaggactctctggaaagccaagattca
atggagttttaa
DBGET
integrated database retrieval system
