Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101956708
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Entry
101956708 CDS
T10664
Symbol
Lsm2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03018
RNA degradation
iti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101956708 (Lsm2)
09123 Folding, sorting and degradation
03018 RNA degradation
101956708 (Lsm2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iti03019
]
101956708 (Lsm2)
03041 Spliceosome [BR:
iti03041
]
101956708 (Lsm2)
Messenger RNA biogenesis [BR:
iti03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101956708 (Lsm2)
mRNA degradation factors
5'-3' decay
Lsm complex
101956708 (Lsm2)
Spliceosome [BR:
iti03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
101956708 (Lsm2)
Complex C
U2 snRNP components
101956708 (Lsm2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
101956708
NCBI-ProteinID:
XP_005339036
UniProt:
I3MKG5
LinkDB
All DBs
Position
Unknown
AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgctcttctactcctttttcaagtcccttgtgggcaaggatgtggtcgtggaactcaag
aatgatctgagcatctgtggaaccctccattctgtggatcagtatctcaacatcaaacta
actgacatcagtgttacagaccctgagaaatatcctcacatgttatcagtgaagaactgc
ttcatccggggctcagtggtccgttatgtgcagttaccagcagacgaagtggatacacag
ttgctacaggatgcagcaaggaaggaagccctgcagcagaagcagtga
DBGET
integrated database retrieval system
