Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101956984
Help
Entry
101956984 CDS
T10664
Symbol
Ddx18
Name
(RefSeq) ATP-dependent RNA helicase DDX18
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
iti03041
]
101956984 (Ddx18)
03009 Ribosome biogenesis [BR:
iti03009
]
101956984 (Ddx18)
Enzymes [BR:
iti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101956984 (Ddx18)
Spliceosome [BR:
iti03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
101956984 (Ddx18)
Ribosome biogenesis [BR:
iti03009
]
Eukaryotic type
90S particles
Helicases
101956984 (Ddx18)
Pre-60S particles
101956984 (Ddx18)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Motif
Other DBs
NCBI-GeneID:
101956984
NCBI-ProteinID:
XP_013222051
LinkDB
All DBs
Position
Unknown
AA seq
693 aa
AA seq
DB search
MSHLPMKLLRKKIEKRNLKLRQRNLKLQRASDVNLSETQNGDVPEETMKVKKVKKSLKRS
VTVGLSEVQNVDMSEENVENIKVKKSLKHSVNVGLSEAQNGDKSEEIVENINVKESPHST
ILTNGEAKTQSPSSETKKKKKKKKRKMANDAGPDTKKVKIEEGSEAPEETENSVEKSAGE
EEDSEVPSLPLGLTGAFEDTSFASLTNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGR
DLLAAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTGALILSPTRELAMQTFGVLKELMTH
HVHTYGLIMGGSNRSAEAQKLANGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADR
ILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATV
DGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHG
KQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTA
RGLNGRGHALLILRPEELGFLRYLKQSKVPLNEFEFSWSKISDIQSQLEKLIEKNYFLHK
SAQEAYKSYIRAYDSHSLKQIFDVNNLNLPQVALSFGFKVPPFVDLNVNSSEGKRKKRGG
GGGFGYQKTKKVEKSKIFKHISKKSSDSRQFSH
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacttgccgatgaaacttctgcgcaagaagatcgagaagcggaacctcaaattg
cggcagcgaaacctaaagttacaaagggcctcagatgtgaacctatcagaaactcaaaat
ggtgatgtgcctgaagaaacaatgaaagtcaaaaaagttaaaaaatccctgaagcgttct
gtaactgtgggcttgtcagaagtgcaaaatgtagatatgtctgaagaaaacgtggaaaat
ataaaagttaaaaaatccctgaagcattctgtgaatgtgggcctgtcagaagcacaaaat
ggagataagtctgaagaaatagtggaaaatataaatgtaaaagaatccccccattctacc
atattaaccaatggagaagcaaaaacacagtctcccagttcagaaacaaaaaagaaaaag
aagaagaaaaagagaaaaatggcaaatgatgctgggcctgatacaaaaaaagtaaaaatt
gaagaaggctctgaagctcctgaagaaacagaaaacagtgtggaaaagtcagctggtgag
gaagaggacagtgaagtacccagcctgcccctgggactaacaggagcttttgaggatact
tcatttgcttctttaactaatcttgtcaatgaaaacactctgaaggcaataaaagaaatg
ggcttcacgaacatgactgaaattcaacataaaagtattaggccacttctggaaggcagg
gatcttttagcagcagcaaaaacgggcagtggtaaaaccctcgcgtttctcatccctgtg
attgaactcattgttaagttaaagttcatgcccaggaatggaacaggagctcttatactc
tcacctactagagaactggccatgcagacttttggtgttcttaaggagctgatgactcac
cacgttcacacatatgggttgatcatgggtggcagtaacagatctgctgaagcacagaaa
cttgctaatgggatcaacatcattgtggcaacaccaggccggctcctggaccacatgcag
aataccccagggtttatgtataaaaacctacagtgtctggttattgatgaggccgatcgt
atcttggatgttggatttgaagaagaattaaagcaaattattaaacttctgccaacacgc
agacagacaatgctcttttctgccacacaaactcgaaaagtggaagacctggcaaggatt
tctttgaaaaaggaaccgttgtatgttggtgttgatgatgataaagctaatgcaacagtg
gatggtcttgagcagggatatgttgtttgtccctctgaaaagagattccttctgctcttt
accttccttaagaagaaccgaaaaaagaaacttatggtcttcttttcatcttgtaaatct
gtaaaataccactatgagttgctgaactacatcgatttacctgtcttggccattcatgga
aagcagaagcaaaataagcgtaccaccacattcttccagttctgcaatgcagattcaggg
atattgttgtgtacagatgtggcagcaagagggttggatattcctgaagttgactggatt
gttcagtatgaccctccagatgaccccaaggaatatattcatcgtgtgggtagaacagcc
agagggctgaatggaagagggcatgccttgctcattttgcgcccagaagaattgggtttc
ctccgttatttgaagcaatccaaggttccattaaacgaatttgaattttcctggtccaaa
atttctgacattcagtctcagcttgaaaaattgattgaaaagaactactttcttcataag
tcagcccaggaagcatacaagtcctacattcgagcatatgattctcattctctgaaacag
atttttgatgttaataacttaaatttgcctcaggttgctttgtcgtttggtttcaaggtg
cctccttttgttgatctgaatgtgaacagcagtgagggcaagcgtaaaaagagaggtggt
ggcggtggatttggctaccagaaaaccaagaaagttgagaagtccaaaatcttcaaacat
attagcaagaaatcatcggacagccggcagttctctcactaa
DBGET
integrated database retrieval system
