Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101957000
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Entry
101957000 CDS
T10664
Symbol
Vars1
Name
(RefSeq) valine--tRNA ligase isoform X1
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
101957000 (Vars1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
iti01007
]
101957000 (Vars1)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
iti03016
]
101957000 (Vars1)
Enzymes [BR:
iti01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
101957000 (Vars1)
Amino acid related enzymes [BR:
iti01007
]
Aminoacyl-tRNA synthetase
Class I (U)
101957000 (Vars1)
Transfer RNA biogenesis [BR:
iti03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
101957000 (Vars1)
Prokaryotic type
101957000 (Vars1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
GST_C
tRNA-synt_1g
tRNA-synt_1_2
Jag_N
GST_C_2
tRNA-synt_1e
Arc1p_N_like
Motif
Other DBs
NCBI-GeneID:
101957000
NCBI-ProteinID:
XP_005339037
LinkDB
All DBs
Position
Unknown
AA seq
1266 aa
AA seq
DB search
MSILYVSPHPDAFPSLRALIAARYGEAGEGPGWGGAHPRICLQPPPTSRTPFPPPRLPAL
EQGPGGLWVWGATAVAQLLWPAGLGGPGGSRAAVLVQQWVSYADTELIPAACGATLPALG
LRSPAQDPQAALGALGKALSPLEEWLRLHTYLAGDAPTLADLAAVTALLLPFRYVLDPSA
RRIWGNVTRWFITCIRQPEFRAVLGDVVLYAGTRSLSQQPGPERDPAPPKTAAQLKKEAK
KREKLEKFQQKQKIQQQQPPPGEQKKPKAEKKEKRDPGVITYDLPTPPGEKKDVNANMPD
SYSPQYVEAAWYPWWEKQGFFKPEYGRPSVSTPNSRGVFMMCIPPPNVTGSLHLGHALTN
AIQDSLTRWHRMRGETTLWNPGCDHAGIATQVVVEKKLWRERGLSRHQLGREAFLQEVWK
WKEEKGDRIYHQLKKLGSSLDWDRACFTMDPKLSAAVTEAFVRLHEEGVIYRSTRLVNWS
CTLNSAISDIEVDKKELTGRTLLSVPGYKEKVEFGVLISFAYKVQGSDSDEEVVVATTRI
ETMLGDVAVAVHPKDPRYQHLKGKSVIHPFLSRSLPIVFDDFVDMEFGTGAVKITPAHDQ
NDYEVGQRHGLEAISIMDSHGALVNVPPPFLGLPRFEARKAVLAALKEQGLFRGIEDNPM
VVPLCNRSKDVVEPLLRPQWYVRCGEMAQAASAAVTRGDLCILPETHQRTWHSWMDNIRD
WCISRQLWWGHRIPAYFVTVNDPAVPPGEDPDGRYWVSGRSEEEAREKAAKEFGVSPDKI
SLQQDEDVLDTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGL
KLTGRLPFREVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHDQLLNSNLDPSE
VEKAKEGQKADFPMGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATK
FALRGLGKGFVPSPTSKPGGHESLVDRWIRSRLAEAVRLSNEGFQAYDFPAVTTAQYSFW
LYELCDVYLECLKPVLNGVDQVAAECARQTLYTCLDVGLRLLSPFMPFVTEELYQRLPRR
TPQAPASLCVTPYPEPAECSWKDPEAEAALELALSITRVVRSLRADYNLTRIRPDCFLEV
ADEATGTLASAVSGYVQTLASAGVVAVLALGAPAPQGCAVALASDRCSIHLQLQGLVDPA
RELGKLQAKRSEAQRQAQRLRERRAASGYSVKVPLEVQEADEAKLQQTEAELRKMDEAIT
LFQKML
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcctctacgtctcccctcacccagatgccttccccagccttcgagccctcata
gctgctcgctatggggaggctggggagggtcctggatggggaggagcccaccctcgcatc
tgtctccagccgcctcccaccagccgcactcctttccccccaccccgcctgcccgccttg
gagcaaggtccgggtgggctctgggtttggggagccacagctgtggcccagctgttgtgg
ccagcaggcctggggggacctgggggtagccgggcagctgtccttgtccaacaatgggtc
agttatgctgatacagagctgataccagctgcatgtggggcaacgctgccagcgctggga
ctccgaagtccagctcaagacccccaggctgcactgggggccctgggcaaggccctgagc
cccttggaggagtggcttcggctgcacacctacctggctggggatgctcccactctggcc
gacctggcggctgtgactgctttgctactacccttccgatatgtcctggacccctctgcc
cgccggatctggggtaatgtgactcgatggtttatcacatgtattcggcagccagaattc
cgggctgtgctaggggatgtagttctgtatgcagggaccaggtctctctctcaacagcca
ggacctgagagagaccctgcacccccaaagacagctgctcaactcaagaaagaggcaaag
aagcgggaaaaattagagaaattccagcagaagcagaagatccaacagcagcagccaccc
ccaggggagcagaagaaaccaaaagcagagaaaaaggagaaacgggatcctggggtcatt
acttatgacctcccaaccccacctggggaaaagaaagatgtcaatgccaatatgccagat
tcctacagtcctcagtatgtggaggctgcctggtatccttggtgggagaagcagggcttc
ttcaagccagagtacgggcgtcctagcgtgtcaacaccaaattcccgaggggtcttcatg
atgtgcatcccaccccccaatgtgacaggctccctgcatctgggccatgcactcaccaac
gccatccaggattccctgactcgatggcaccgcatgcgtggggagaccaccctgtggaac
ccaggctgtgaccacgcaggcattgccacccaggtggtggtggagaagaaactgtggcgg
gagcggggactgagccgacaccagctaggccgagaggcctttctgcaggaggtctggaag
tggaaggaagagaaaggtgaccggatttaccatcagttgaagaaacttggcagctccttg
gactgggatcgagcctgtttcaccatggaccctaaattgtcagcagctgtgacagaggct
tttgtccgacttcatgaggaaggtgtcatctaccgcagtacccgcctcgtcaactggtcc
tgtaccctcaactctgccatctctgacattgaggtggataagaaggagctgacaggtcgc
accctgctctctgttcctggttataaggaaaaagtggagtttggggtcctcatctccttt
gcctacaaggtccaaggctcagacagcgatgaagaggtggtggtggcaacaactcggatt
gagactatgctgggagatgtggctgtagctgtgcaccccaaagatcctagataccagcac
cttaagggaaagagcgtgatccatccatttctgtctcggagccttcctattgtctttgat
gattttgtggacatggaatttggcacaggtgcggtgaagatcacccctgcacatgaccag
aatgactatgaggttgggcagcgtcatgggctggaggccatcagtatcatggattcccat
ggggcccttgtcaatgtacccccacctttcctgggcctgcccagatttgaggccagaaag
gcagttctggcagcactgaaagagcaaggactgtttcgtggcattgaggacaaccccatg
gtggtgccactttgcaaccgttccaaggatgtagtggaacctctgctaaggccacagtgg
tatgtgcgctgcggggagatggcccaggctgccagtgctgctgtgacccggggagacctc
tgcattctgcctgagacccatcaacggacgtggcattcctggatggacaatatccgggac
tggtgcatttcccggcaattgtggtggggccatcgcatcccagcctacttcgtcactgtc
aatgacccagcggtacctcctggggaggaccccgatgggcggtactgggtgagtggacgc
agtgaggaggaggcccgagaaaaagcagccaaggagtttggagtgtcacctgataagatt
agcctccagcaagatgaggatgtattggacacctggttctcttccggcctcttccccttc
tccattttgggctggcccaaccagtcagaagatttgagtgtgttctacccagggactctg
ctggagacgggtcacgacatcctcttcttctgggtggctcgaatggtcatgcttggcttg
aaacttaccggcaggctgcctttcagagaggtctacctccatgccattgtgcgtgatgct
catggacgaaagatgagcaagtctctaggcaatgtcattgaccccctggatgtcatccac
ggagtctccctgcagggcctccatgaccaattactgaacagcaacctggaccctagtgag
gtggagaaggccaaggaagggcagaaggcagactttcccatggggattcctgagtgtggc
actgatgctctccggtttggactctgcgcttacacatcccagggtcgtgacatcaacctt
gatgtgaaccgaatattgggttaccgccatttctgcaacaagctctggaatgccaccaag
tttgctctccgaggccttgggaagggttttgtgccctcacctacctccaagcctggaggc
cacgagagcctggtagaccgctggattcgcagtcgcctggctgaggctgtgaggctcagt
aatgaaggtttccaggcctatgatttcccagctgtcaccaccgcccagtacagcttctgg
ctctatgagctctgtgatgtctacttggagtgcctaaaacctgtcctgaatggagtggac
caggtggcagctgaatgtgcccgccagaccctttacacctgcctagatgttggcctgcgg
ctgctctcacccttcatgccctttgtgacagaggaactctaccagaggctgccccggagg
accccacaagctccagctagtctttgtgttaccccctacccagagcctgcagagtgctcc
tggaaagaccctgaggcagaagctgcccttgagctggcgctaagcatcacccgagttgtg
cgctccctgcgtgcagactacaacctaacccggattcggcccgactgtttcctggaagtg
gctgatgaggccacaggcactcttgcatcggcagtgtcaggctacgtgcagacactagcc
agtgcgggtgtggtggctgtcctggcgttgggggctcctgcaccacaaggctgcgcagtg
gccctggcctctgaccgatgctcaatccacctgcagctgcagggcctggtggacccagcc
cgggagctgggcaagctgcaggctaagcgaagtgaggcccaacggcaggcccagcgtctg
cgggagcgacgtgctgcctcgggctactctgtcaaggtgcccctcgaagtccaggaggca
gacgaagccaagctccaacagacagaggcagagctcaggaagatggatgaggctatcacc
ctattccagaagatgctgtga
DBGET
integrated database retrieval system
