Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101957397
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Entry
101957397 CDS
T10664
Symbol
Rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X2
KO
K10754
replication factor C subunit 1
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03030
DNA replication
iti03410
Base excision repair
iti03420
Nucleotide excision repair
iti03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101957397 (Rfc1)
03410 Base excision repair
101957397 (Rfc1)
03420 Nucleotide excision repair
101957397 (Rfc1)
03430 Mismatch repair
101957397 (Rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
iti03032
]
101957397 (Rfc1)
03400 DNA repair and recombination proteins [BR:
iti03400
]
101957397 (Rfc1)
DNA replication proteins [BR:
iti03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
101957397 (Rfc1)
DNA repair and recombination proteins [BR:
iti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
101957397 (Rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
RuvB_N
Rad17
BRCT_2
AAA_22
AAA_14
AAA_17
AAA_33
AAA_16
AAA_18
AAA_5
nSTAND3
AAA_7
AAA_30
NTPase_1
RNA_helicase
NPHP3_N
AAA_28
TIP49
Motif
Other DBs
NCBI-GeneID:
101957397
NCBI-ProteinID:
XP_013211692
LinkDB
All DBs
Position
Unknown
AA seq
1148 aa
AA seq
DB search
MDIRKFFGVIPSGKKLVNETVKKNEKTKSVEETLKGKKGIKEIKVNSSCKEDASKQKQPN
KKKRIIYDSDSESEETVQVKNAKKQSEKLPLSSKPSKILRKDPVTYISETDEDDDFMCKK
AASKSKENGRSTNSYLGTSNMKKNEENTKTKNKPLSPIKLTPTSVLDYFGTGSVQRSDKK
MVASKRKQPSQNTNDSILNDEVIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPKTKK
AQKNTEDGETFSSAQANLSKPEKHKYPHKVKPEQFSNARKSYSPNKSTKCENSKESQQHS
KSSGESSSPKASSKLALMKAKEESSYKETEPVASKRKDSANELKGEKKTPKKTKSSPAKK
ESVSPEDSEKKRSNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERD
EAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPG
KKSKYEIAVEAEMKKEKSKLERTPQKNNQGKRKSSPTKKESESKRNKLTPKRDSSVKAIK
KETQETNVPRKALNFKEQVAQDTQGDSKARDLADSGESKVENLLWVDKYKPTSLKTIIGQ
QGDQSCANKLLRWLRNWHKSSPEEKRHAKFGKFAGKDDGSSFKAALLSGPPGVGKTTTAS
LVCQELGYSYVELNASDTRSKNSLKALVAESLNNTSIKGFYSSSGGAAPSVSMKHALIMD
EVDGMAGSEDRGGVQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQI
KGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRA
KKDIKLGPFDVARKVFAVGEETAHMSLMDKSDLFFHDYSIAPLFVQENYVHVKPVAAGGD
MKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQFPTFP
SWLGKHSSTGKHDRIVQELALHMSLRTYSSKRTVNMDYLSHIRDALVQPLTSQGVEGIQD
VVALMDTYYLMKEDFENIMEISSWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLQVI
KTSRPSTSSALDSEYNEELHEDDSQSEEKDQDAIETDAMIKKKTKSPKPSKPEKDKESKK
GKGKSLKK
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atggacattcggaaattctttggagttataccaagtggaaaaaaacttgtaaatgaaaca
gtaaagaagaatgagaaaacgaagtctgttgaagaaactttaaaaggaaagaaaggaata
aaggaaatcaaggtaaatagttcttgtaaagaggatgcctccaaacagaagcaaccaaac
aagaaaaagaggattatctatgattcagattcagaatcagaggagacagtgcaggtaaaa
aatgccaaaaagcaatcagaaaaattgccgttgtcttctaaacctagtaaaattttgcgg
aaggatcctgttacatacatttcagaaacagatgaagatgacgactttatgtgtaagaaa
gcagcctctaaatcaaaagaaaatggaagatctacaaatagttatcttggaacatcaaac
atgaaaaagaatgaagaaaacactaagaccaagaataaacctttatcaccaataaaactt
acaccaacctcagtgcttgattattttggaactggaagtgtccaaagatcggataagaaa
atggtagcaagcaaaagaaaacaaccttcacagaatacaaatgattccatattaaatgat
gaagtcatcgccaagcaattgcaacttgatgaagatgcagagctggagaggcaattgcat
gaagatgaagaatttgccagaacgttagccatgttggatgaggaacccaagaccaaaaag
gcccaaaagaacactgaagatggagaaacgttttcatctgcccaagccaatttaagtaaa
ccagaaaaacataaatatcctcataaagtaaaaccagaacaattttcaaatgcaagaaag
agctatagtcctaataagtcaactaagtgtgaaaactcaaaagaatctcagcaacattcc
aagtcatcaggagaatcctcttctccaaaggctagttctaagttggcacttatgaaagca
aaagaagagagttcctataaagaaacagagcctgtggcctcaaaaagaaaagacagtgcc
aatgagttgaaaggagagaagaaaactcctaagaaaaccaaaagttctccagctaaaaaa
gagtctgtaagtccagaagattctgaaaagaaacgaagtaattatcaagcttatcgaagc
tacttaaatcgagaaggtcccaaagctctgggctccaaagaaataccaaagggagctgaa
aattgcttggaaggccttatatttgtgatcacaggagtgctggagtccattgaacgagat
gaagccaagtctttaattgaacgttatgggggaaaagtaacaggaaatgtcagcaagaaa
accaactaccttgtcatgggtcgtgatagtggacagtccaagagtgataaggcagcagcc
ttggggacaaaaattattgatgaagatggactgttgaatttgattcgaactatgccaggc
aagaagtctaaatatgaaatagcagttgaagctgagatgaagaaagaaaaatccaaattg
gagagaacaccccaaaaaaataatcaaggaaaaagaaaaagtagtccaaccaagaaggaa
tcagaatctaaaaggaacaagctaactcctaaaagggacagttctgtaaaggcaataaaa
aaggagacacaggaaacaaacgtgcctcggaaagccctgaactttaaggagcaggtggcc
caggacacacagggtgacagtaaggctagggatttggctgacagcggtgaaagcaaagtg
gaaaatttgctctgggtagataaatacaagccaacttcactcaagactataattggacag
caaggtgaccagagttgtgccaataaactgctacgctggctccgaaactggcacaagagt
tctcctgaagagaagagacatgcaaagtttggtaaatttgccggtaaagacgatggctct
agttttaaagcagcattgctctcaggccctcctggtgttggcaaaaccaccacagcttct
ctggtgtgtcaggaattgggatatagctacgtggaactaaatgcaagtgacactcggagt
aagaacagtttgaaggcacttgttgctgaatcgctgaataacaccagcatcaaaggcttt
tattcaagctcaggtggagcagccccttccgtaagcatgaaacatgcgctcatcatggat
gaagtagacggcatggcaggcagtgaagaccggggcggagtgcaggaattaattggtctg
ataaaacatactaaaatacccattatttgtatgtgtaatgatagaaatcatcccaagatt
cgctctttggttcattattgttttgatcttcgttttcaaagacctcgggttgaacagata
aagggtgctatgatgtccattgcatttaaagagggtttaaagattccccctcctgctatg
aatgaaataattttaggagccaatcaagatatcagacaggttttgcacaatctaagtatg
tggtgtgcgcgaagcaaggcgctaacctacgatcaggccaaggccgactctcatagggcc
aagaaggatatcaaactgggcccatttgatgttgcccggaaagtgtttgcagttggagag
gagactgctcatatgtcacttatggacaaatcagatctcttttttcatgactattcaata
gcacccctctttgtccaggagaactatgtgcatgtgaagcctgtagctgcagggggtgac
atgaaaaagcacttgatgcttttgagccgagcagcagacagcatttgtgatggggactta
gtggacagtcagattcggagtaagcaaaactggagtcttctgcccacacaggccatttat
gccagtgttcttcctggagagttgatgagggggtacatgacccagtttcccacctttccg
agctggctgggcaagcactcatctactggcaaacatgatcgtattgttcaggaactagca
ttgcatatgagtctcagaacttactctagcaaaaggactgtgaacatggattatctgtca
catataagggatgcacttgtacaacccttgacttcacaaggggtggaaggaatacaggat
gttgttgcacttatggacacatattatctgatgaaagaagactttgagaatatcatggaa
attagcagctggggtggcaaacctagtcccttttccaagctggaccccaaggtgaaagca
gctttcacaagagcttacaataaggaagcccacctcaccccatattcacttcaggtaata
aagacatctagacccagcacgagctcagcactagattctgaatacaatgaagaattacat
gaagatgactctcagtctgaggagaaagaccaagatgctatagagactgacgctatgatc
aagaaaaagacaaaatctccaaagccttcaaaaccagaaaaagataaggagtccaaaaaa
ggaaaaggaaaaagtttgaagaaatga
DBGET
integrated database retrieval system
