Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101957483
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Entry
101957483 CDS
T10664
Symbol
Sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101957483 (Sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
iti03021
]
101957483 (Sf3b3)
03041 Spliceosome [BR:
iti03041
]
101957483 (Sf3b3)
03036 Chromosome and associated proteins [BR:
iti03036
]
101957483 (Sf3b3)
Transcription machinery [BR:
iti03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
101957483 (Sf3b3)
Spliceosome [BR:
iti03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101957483 (Sf3b3)
Complex B
101957483 (Sf3b3)
Complex C
U2 SnRNP specific factors
101957483 (Sf3b3)
Chromosome and associated proteins [BR:
iti03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
101957483 (Sf3b3)
TFTC complex
101957483 (Sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
101957483
NCBI-ProteinID:
XP_005318464
UniProt:
I3M925
LinkDB
All DBs
Position
Unknown
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
EDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgtacaatttgaccttgcagcgagccactggcatcagctttgccattcatggc
aatttctctggaaccaaacaacaggaaattgttgtttctcgtgggaagatcttggagcta
cttcgcccagaccctaacactggaaaagtacataccctcctcactgtggaagtatttggt
gttatccggtcactcatggcctttaggttgacaggtggcaccaaggactacattgtagtt
ggcagtgactcaggtcggattgttatcttggaataccagccatctaagaatatgtttgag
aaaattcaccaagaaacttttggcaaaagtggatgtcgccgaattgttcctggccagttt
ttagctgtggatcccaaagggcgagctgttatgattagtgccattgagaaacagaagttg
gtatatatcttgaacagagatgctgcagcccgacttaccatttcatctcccttggaggct
cacaaagcaaacactttagtatatcatgtggttggagtagatgtaggatttgaaaatcca
atgtttgcttgtctggaaatggattatgaggaagcagacaatgatccaacaggggaagca
gcagcaaatactcagcagacacttactttctatgaactagaccttggtttaaatcatgtg
gtccgaaagtacagtgaacctttggaggaacatggcaacttccttataacagttccagga
ggatcagatggtccaagtggagtgttgatctgctctgagaactatatcacctacaagaac
tttggtgaccaaccggatatacggtgtccaattcccaggagacggaatgatctggatgat
cctgaaagaggaatgattttcgtttgttctgccacccataagaccaaatcaatgttcttc
tttttggcccaaactgagcagggtgatatcttcaagatcactttggaaacagatgaagat
atggtaactgagatccggctgaagtattttgatactgtgcctgttgctgctgccatgtgt
gtgttgaaaacaggcttcctttttgtagcatcagaatttggaaaccattacttatatcaa
attgcacatcttggagatgatgatgaagaacctgagttttcatctgctatgcctctggaa
gaaggagatacattcttctttcagccaagaccactcaaaaaccttgtattggtggatgaa
ctggacagcctttctcccattctattttgccagattgctgatctggccaatgaagatact
ccacagttgtatgtggcctgtggtagaggacctcggtcatctctaagagtcttaaggcat
ggacttgaggtgtcggaaatggctgtttctgagctacctggtaaccccaatgctgtctgg
acagtacgtcggcacattgaagatgagtttgatgcctacatcattgtgtctttcgtgaat
gccacccttgtactgtctattggagagactgtagaagaagtgactgactctgggttcctg
ggtaccaccccaaccttgtcctgctccttgttaggagatgatgccttggtacaggtttat
ccagatggtattcggcacattcgagcagataagagagtcaatgaatggaagacccctgga
aagaaaacaattgtgaagtgtgcagtgaaccagcgacaagtggtgattgccctgacagga
ggagagctggtctattttgagatggatccctcaggacagctgaatgagtacactgagcgg
aaggagatgtcagcagatgtggtgtgcatgagtctggctaatgtgccccctggagagcag
cgttcccgcttcctggctgtgggactggtggacaatactgtcagaatcatctccctggac
ccctcagactgtttgcaacctctgagcatgcaagctctcccagctcagcctgagtccttg
tgtattgtggaaatgggtgggaccgagaagcaggacgaactgggtgagaggggctctatt
ggcttcctctacctaaacattggactgcagaatggtgtgctgctgagaactgtcctagac
cctgtcactggggacctgtctgatactcgcactaggtacctgggttcccgtcctgtgaaa
ctcttccgagtccggatgcaaggccaggaggcagtattggccatgtcaagtcggtcttgg
ttaagctattcttaccagtctcgctttcatctcactcccctgtcttatgagaccctggaa
tttgcatctggttttgcctctgaacagtgtcctgagggcattgtggccatctccaccaat
accctgaggattttggcattggagaagcttggtgctgtcttcaatcaagtagcctttcca
cttcagtacacacccaggaaatttgtcatccaccctgagagtaacaaccttatcattatt
gagacagaccacaatgcctatactgaggctacaaaagctcagagaaagcagcagatggca
gaggaaatggtggaagcagcaggagaggatgaacgggagctagctgcagaaatggcagca
gcattcctcaatgaaaacctccctgaatccatttttggagctcccaaggctggcaatggg
caatgggcttctgtgatccgggtgatgaatcctattcagggaaacaccctggatcttgtc
cagctggaacagaatgaggcagcttttagtgtggctgtgtgtaggttctccaacactggt
gaagattggtatgtgctggtgggtgtggctaaggatctgatactcaaccctcgatctgtg
gcaggaggctttgtctatacttacaagcttgtgaacaatggggaaaaactggagtttttg
cacaagactccagtggaagaagtccctgctgccattgctccttttcaagggagggtgttg
attggtgtggggaagcttttgcgagtctatgacctggggaaaaagaagttactccgaaaa
tgtgagaataagcatattgccaattatatatctggaatccagactattggacatagagta
attgtgtcagatgtccaagaaagtttcatctgggttcgctacaagcgtaatgagaaccag
ctcatcatttttgctgatgacacctacccccggtgggtcactacagctagcctcctagac
tatgacactgtggctggagcagacaagtttggtaacatttgtgtggtgaggctcccacct
aacaccaatgatgaagtggatgaggatcccacaggaaacaaagccctgtgggaccggggc
ttgctcaatggggcctcacaaaaggcagaggtgatcatgaactaccatgttggggagaca
gtgctgtcattacagaagactacgttgatccctggaggttcagaatcacttgtctatacc
accttgtcaggtggaattggcatccttgtcccattcacatcccatgaggaccatgacttc
ttccaacacgtagaaatgcacctgaggtctgagcatcccccgctttgtgggcgggaccac
cttagctttcgttcctattatttccctgttaagaatgtgattgatggagacctctgtgag
cagttcaactccatggagcccaataagcaaaagaatgtctctgaagaactggaccgaacc
ccacctgaggtgtccaagaagcttgaggatatccggacccgttatgccttctga
DBGET
integrated database retrieval system
