Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101957537
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Entry
101957537 CDS
T10664
Symbol
Scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
101957537 (Scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
iti04131
]
101957537 (Scarf1)
Membrane trafficking [BR:
iti04131
]
Endocytosis
Phagocytosis
Scavenger receptors
101957537 (Scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_2
EGF_PEAR1L
EGF_C8A_B_C6
Motif
Other DBs
NCBI-GeneID:
101957537
NCBI-ProteinID:
XP_005327955
UniProt:
I3M5F8
LinkDB
All DBs
Position
Unknown
AA seq
893 aa
AA seq
DB search
MSVHPSGLVSSGKALGGSREGVGSCGSQINSSPPTLLAAMGLGLLFLLLLLWTAGIQGSE
LDPNGQHVCMGSSPSAELQCCPGWRQKDRECTIPICEGLDACQKDEICVKPGLCRCKPGF
FGAQCSSRCPSQYWGPDCRETCPCHPHGQCDPATGKCQCQADRWGRRCEFTCACSSHGRC
DPETGVCHCNRGWWSSTCRRQCQCSSTSQCDQSTGACLCHSGWWGRRCSFRCSCNGSPCE
QLSGRCICQPGWWDSECRQKCQCVRGLCSATSGQCSCPPGFHGARCELPCAPGSYGVQCS
KSCGQCEQNASCSPDTGHCESCKPGWDGTQCQQPCSPGTFGKNCSQQCPHCRLGEACQPE
TGHCQHCDPGWLGPRCEDSCPMGTFGEGCGSTCPTCIQGSCDAVTGECVCSAGYWGTSCN
SSCPSGFHGNNCSIPCQCTEGLCHPVSGACPYSKDAILTAGILVPLLLLLLGIACWAYYR
WTTRLDLKDRPVRDGAALSRMKQQVWGALTSLGSALSCGSLSRHKLPWVTVSHHDPEVPF
NHSFIEPPSAGWASDDSFSSDPESGVEDEVPAYCVPPQQGMVPVTHAESAEASLAGGPFP
PPEDTSTPFAIPRTSSLARAKRPSVSFAEGTKFASQSCRSSGELSSPFRKPKRLSRGAQP
GPEGQEAKESATLEQGNTDEAAPATVSPGDSAIDHQYYLEDQTAAECVEAIDSGVKETSD
PVATIYMLAGTPQRSEGPVLSIFRHFGNFWKGQAEAKVKTAIPKPPRRVLGQNKNSPGLA
SSSASQRPGVIAKPPRRARGQNKGNPGLSSGSASQSFGLAPNAKLSCTMESIGVRSEEVS
RGVGDGIESSGRAQEPVIGNSPPEQDLQKQAEEEGQEEPLYENVVLVSGPPES
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtccacccctccggcctggtttcctcaggaaaagccttgggaggaagcagggag
ggggttgggagctgtgggagccagattaactcaagtcctcccactttattggccgccatg
gggctggggctgctgttcctactgctgctgctctggactgcagggatccaggggtctgag
ctggatcccaatgggcaacacgtctgcatgggcagcagcccctctgctgagctgcagtgc
tgcccaggttggaggcagaaagatcgagaatgcaccattcctatctgtgagggactggat
gcctgccagaaagacgagatatgtgtgaaaccaggcctctgccgatgcaaacctggattc
ttcggggcccagtgcagctcccgctgcccaagccagtactggggccccgactgccgtgag
acttgcccctgccacccacacggccagtgcgacccagccaccggcaagtgccagtgccaa
gcggaccgctggggcagacgctgtgagttcacgtgtgcctgcagctcccacggccgttgc
gaccctgagacgggtgtgtgccactgcaatcggggctggtggtcatccacgtgccgccgt
caatgccagtgcagttctacatcacagtgtgaccagtccacaggagcctgtctctgccac
tcaggctggtggggccgccgctgcagcttccgctgctcctgcaatggctccccttgcgag
cagctttcgggccgctgcatctgccagcctggctggtgggattcggagtgccgtcagaag
tgtcagtgcgtgcgtggcctctgcagtgccacctccggtcagtgctcttgccctcctggc
ttccacggcgcgcgctgtgagctgccctgtgctccgggtagctacggtgtgcagtgcagc
aaaagctgtggccaatgtgagcagaatgcatcgtgctccccagacacaggccactgtgag
tcctgcaagccaggctgggatgggacccagtgccagcagccctgctcaccaggcaccttt
ggcaagaactgcagccagcagtgccctcactgccggcttggggaggcctgtcagccagaa
acaggccactgtcagcactgtgaccctggctggctggggcccagatgtgaagactcctgc
ccaatgggcacctttggggagggctgtggctctacctgccccacctgtattcagggctcc
tgtgatgctgtaacaggagaatgtgtctgcagtgctggctactgggggaccagctgcaac
agttcctgcccatctggcttccatggaaacaactgctctattccctgccaatgtacagag
ggactctgccaccctgtctcaggggcctgcccttacagtaaggatgccatcctcactgct
ggcatcctggtccctctgctgctgctcctcctgggcattgcctgctgggcctactaccgc
tggaccactcggttggacctcaaggacaggcctgtgagagatggtgctgccttgtccagg
atgaagcagcaggtctggggggcgctgaccagtctaggctctgccctgtcctgtggttcc
ctcagcagacacaaacttccctgggtgacagtctctcaccatgacccagaggtccccttc
aaccacagcttcatcgagccaccctctgctggctgggcctcagatgactccttctcttct
gatcctgagtctggagtagaggacgaagttcctgcctactgtgtgccaccccaacaaggg
atggtcccggtaacccatgcagagtcagcagaggccagcctggctggtggccccttccct
cccccagaggatacctccacaccatttgctattccacgtacctccagcctagcgcgggcc
aagcgaccatcagtttcctttgctgaaggcaccaagtttgcgtcacagagttgccgaagc
tcaggagaactctccagcccattccgaaaacccaaaaggctctccaggggggcccaacca
ggtcctgaaggtcaggaagccaaggagtccgcaactctggagcaaggaaacacagatgag
gctgctcctgctactgttagccctggagattctgccattgaccaccagtactaccttgaa
gaccagacagcagctgagtgtgtggaagccattgacagtggtgtcaaggagacctcagat
cctgtggccacaatctacatgctggcagggacgccccagagatctgagggtcctgtctta
tctatctttcggcattttggtaatttctggaaaggtcaggcagaagctaaggtcaagact
gccatccctaagcctccacgccgagtcctgggtcagaacaagaatagccctgggctggcc
tctagttctgccagccagaggcctggtgttattgctaagccaccacgccgggcccggggt
cagaacaagggcaaccctgggctgtcctctggctctgccagtcagagctttggcttagct
cccaatgccaaactcagttgtaccatggagtctataggagttagatcagaggaagtgtcg
agaggggtaggggatggcattgagagctcagggagggcccaggagccagtcattgggaac
agccccccagaacaagatctccaaaagcaggcagaagaggaagggcaggaggagcccttg
tatgagaatgttgtactcgtgtctgggccaccagagtcctaa
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