Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101957661
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Entry
101957661 CDS
T10664
Symbol
Smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03082
ATP-dependent chromatin remodeling
iti04714
Thermogenesis
iti05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101957661 (Smarcc2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
101957661 (Smarcc2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
101957661 (Smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
iti03021
]
101957661 (Smarcc2)
03036 Chromosome and associated proteins [BR:
iti03036
]
101957661 (Smarcc2)
Transcription machinery [BR:
iti03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101957661 (Smarcc2)
Chromosome and associated proteins [BR:
iti03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
101957661 (Smarcc2)
PBAF complex
101957661 (Smarcc2)
GBAF(ncBAF) complex
101957661 (Smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
101957661
NCBI-ProteinID:
XP_013218526
LinkDB
All DBs
Position
Unknown
AA seq
1224 aa
AA seq
DB search
MINHYLGLFFFPFSAFSQYIQAEPPTNKSLSSLVVQLLQFQEEVFGKHVSNAPLTKLPIK
CFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRNVEMFMTIEKSLVQNNCLSR
PNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYPVPGNLEEEEWVRPVMKRDK
QVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAKWILDTDTFNEWMNEEDYEV
NDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRKRSPSPSPTPEAKKKNAKKG
PSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKTVNTKKDSESAPVKGGTMTD
LDEQEDEGMETTGKDEDESSTGNKGEQTKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVH
AIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMR
VHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSGLVPLQPKTPQGRQVDADTK
AGRKGKELDDLVPETAKGKPELQSSASQQMLNFPDKGKEKPTDMQNFGLRTDMYTKKNVP
SKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPY
LEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKSALEEFSKMKEEVP
TALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPERIEESGTDEARAEGQATDE
KKEPKEPREGGVVEEEAKEKTSEAPKKDEEKGKEGDSEKESEKSDGDPIVDSEKEKEPKE
GQEEILKEVVESEGERKTKVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVA
LLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRARQQ
HFQQMHQQQQQPPPTLPPGSQPIPPSGAAGPPTVHGLAVAPASVAPAPAGSGAPPGSLGP
SEQIGQAGPTAGPQQPQPTGAPQPGAVPPGVPPPGPHGPSPFPNQQTPPSMMPGAVPGSG
HPGVAGNAPLGLPFGMPPPPPPAPSIIPFGSLADSISINLPPPPNLHGHHHHLPFAPGTL
PPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAAAQSPAIVAAVQGNLLPSASPLPD
PGTPLPPDPTAPSPGTVTPVPPPQ
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgataaaccattatctgggtctatttttctttcctttctctgccttttcccagtatatt
caagctgaaccacctactaacaagtccctgtctagtctggtcgtacagttgctacaattt
caggaagaagtttttggcaaacatgtcagcaatgcaccgctcactaaactgccgatcaaa
tgtttcctagatttcaaagcaggaggctccttatgccacatacttgcagctgcttacaaa
ttcaagagtgaccagggatggcggcgttacgatttccagaatccatcacgcatggaccgc
aatgtagaaatgttcatgaccattgagaagtctttggtacagaataattgcctgtctcga
cctaacatttttctgtgcccagaaattgagcctaaattgctggggaaattaaaggacatt
atcaagagacaccagggaacagtcactgaggataagaacaatgcctcccatgttgtgtat
cccgtcccagggaacctagaagaagaggaatgggtacgaccagtcatgaagagggataag
caggttcttctgcactggggctactatcctgacagttatgacacatggatcccagccagt
gaaattgaagcatctgtggaagatgccccaactcccgagaaacctaggaaggttcatgct
aaatggatcctagacacagacaccttcaatgaatggatgaatgaggaagattatgaagta
aatgatgacaaaaaccctgtctctcgccggaaaaaaatttcagctaagacattgacagat
gaggtgaatagcccagattcagatcgaagggacaagaaaggagggaactataagaagaga
aagcgttccccctctccttcaccaaccccagaagctaagaagaaaaatgctaagaaaggt
ccctcaacaccttacactaagtcaaagcgtggccacagagaggaagagcaagaagacctg
acaaaggacatggatgagccctctcccgtccccaatgtagaagaagtgaccctgcccaaa
acagtcaatactaagaaggactcggagtcagccccagtcaaaggaggcaccatgactgac
ctagatgagcaggaggatgaaggcatggagaccacgggcaaggatgaggatgaaagcagt
acggggaacaagggggagcagaccaagaatccagatctgcatgaggacaatgtgactgag
cagacccaccacatcatcattcctagctatgctgcctggtttgattacaacagtgttcat
gccattgagcggagggctctccctgagttctttaacggcaagaataagtccaagactcca
gagatctacctggcctatcgaaacttcatgattgacacttaccgactgaaccctcaggaa
tatctcacctctactgcctgccgtcggaacctggcaggtgacgtctgtgccatcatgagg
gtccatgccttcctagaacaatggggtcttattaactaccaggtggatgctgagagtcga
ccaaccccaatggggcctccacccacttctcacttccatgtcttggctgacacgccatca
gggctggtacctctgcagcccaaaaccccacagggccgccaggttgatgctgataccaag
gctgggcggaagggcaaagagctggatgacctggtgccagagacggctaagggcaagcca
gagctgcagagctctgcttcccaacaaatgctcaactttcctgacaaaggcaaagagaaa
ccaacagacatgcagaactttggactgcgcacagacatgtacacaaagaagaatgttccc
tccaagagcaaagctgcagccagtgctactcgagagtggacagaacaggaaaccctgcta
ctcctggaggccctggaaatgtacaaggatgactggaacaaagtatccgagcatgtggga
agccgtacgcaggacgaatgtatcttgcattttcttcgccttcccattgaagacccctac
ctggaagactcagaggcctccctgggccccctggcctaccagcccatccccttcagtcag
tcgggcaaccctgttatgagcacggttgcctttctggcctctgtcgtcgatccccgagtc
gcttctgcagctgcaaagtcagccctagaagagttttccaaaatgaaggaagaggtgccc
acagccttggtggaggcccatgttcggaaagtggaagaagcagccaaagtgacaggcaag
gctgacccagcttttggtctggaaagcagtggcattgcaggaaccacctccgatgagcct
gagcgcattgaggagagcgggaccgatgaggcacgggcagagggccaggccacagatgaa
aagaaggagcccaaggaaccccgagaaggaggggttgtagaggaggaagcaaaggagaaa
acaagtgaggctcccaagaaggatgaagagaaaggaaaagaaggcgacagtgagaaggag
tcagagaagagtgatggagacccgatagttgactctgagaaggagaaggaaccaaaggaa
ggacaggaggaaatattaaaggaagtggtggagtcggagggggaaaggaagacaaaggtg
gaacgggatattggtgagggtaacctctccactgctgccgctgctgctctggctgccgct
gcagtgaaggccaagcacttggctgctgttgaggaaagaaagatcaaatctttggtggcc
ctgctggtggagacccagatgaaaaaactggagatcaaactccggcactttgaggagctg
gagacaataatggaccgggagcgggaagcactggagtatcagaggcagcaactcctggca
gaccgacaagccttccacatggagcagctgaagtatgcggagatgagggcacggcagcag
cacttccagcagatgcaccaacagcagcagcagccaccaccaaccctgcctccaggctcc
cagcctatacccccctcaggggctgctgggccacccacagttcatggcctagctgtggct
ccagcctctgtggcccctgctcctgctggcagtggggcccctcctggaagcttgggccct
tctgaacagattgggcaggcaggaccaacagcagggccacagcagccacaaccaactgga
gccccccagcctggggcagtcccaccaggggtacccccccctggaccccatggcccctca
ccgttccccaaccaacaaactcctccctcaatgatgccaggggcagtgccaggcagcggg
cacccaggcgtggcgggtaatgctcctttgggtttgccttttggcatgccgcctcctcct
cctcctgctccatccatcatcccatttggtagtctagctgactccatcagtattaacctt
ccccctcctcctaacctgcatgggcatcatcaccatctcccgttcgccccgggcacactc
cccccacctaacctgcctgtgtccatggcgaaccctctacatcctaacctgccggcgacc
accaccatgccatcttccttgcctctcgggccggggctcggatccgccgcagcccagagc
cctgccattgtggcagctgttcagggcaacctcctgcccagtgccagcccactgccagac
ccaggcactcccctgcctccagaccccacggccccaagtccagggacagtcacccctgta
ccacctccacagtga
DBGET
integrated database retrieval system
