Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101958248
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Entry
101958248 CDS
T10664
Symbol
Col11a2
Name
(RefSeq) collagen alpha-2(XI) chain isoform X2
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04820
Cytoskeleton in muscle cells
iti04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101958248 (Col11a2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101958248 (Col11a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
iti00536
]
101958248 (Col11a2)
Glycosaminoglycan binding proteins [BR:
iti00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101958248 (Col11a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
101958248
NCBI-ProteinID:
XP_021577705
LinkDB
All DBs
Position
Unknown
AA seq
1736 aa
AA seq
DB search
MERCSRCHRLLLLLPLVLGLSAAPGWAGAPSVDVLRALRFPSLPDGVRKARGICPSHVAY
RVSRPDQLSAPTRQLFPGGFPKDFSLLTVVRTRPGLQAPLLTLYSAQGVQQLGLELGRPV
RFLYEDQTGRPQPPAQPVFRGLSLADGKWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSAR
PVLDTRGVVIFGARILDEEVFEGDVQELLIVPGVQAAYQSCEQKDLECEGSQRERPQNQQ
SHRAQRSPKQQPSRLHRPQNQEPQQQPTESLYYDYEPPYSDVMTTGTTPDYQDPTPGEEE
EVLESSPLPLPEEEQTDLQVPPTADRFLAEEYGEGGTDPPAGLYDYTYGYGDDYREETEL
GPALSAETAHSGAAALGPRGLKGEKGEPAVLEPGMFVEGPPGPEGPAGLAGPPGIQGNPG
PVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQ
ARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRA
GADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGDRGDDGEIGPR
GLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLP
GPQGAIGPHGEKGPRGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR
GVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPT
GDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGER
GPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKD
GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGESGPMGERGHPGPPGPPGEQGLPGTA
GKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPAGPPGPAGSPGER
GTAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGIQGPVGLPGPAGPPGVA
GEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAK
GDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP
GGVGNLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKGESGQPGEAGPPGPKGPTGDD
GPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR
GPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGSVGPAGPAGKPGPDGLRGLPGAVGQQGRP
GATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSP
GQKGETGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPAGPKGEKGVQGPPGHPGPLGEV
IQPLPIQMPKKTRRSVDGGRLMQEDEAMPTGGAPGSPRGLEEIFGSLDSLREEIEQMRRP
TGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVT
QFSYVDSEGSLVGVVQLTFLRLLSVSAHQDVSYPCSGASREGPLRLRGANEDELSPETSP
YVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPPRRGGVLLGPVCFMG
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtgcagccgctgccatcgcctcctcctgctcctacctctggtgctggggctc
agcgctgccccgggctgggcaggtgcaccctctgtggatgtgctccgggccctgaggttt
ccctctctccctgatggtgtccggaaggcaaggggcatctgtccatctcatgtggcctac
agagtgtcgcgacctgatcagcttagtgcacccacccgccagctcttcccaggaggtttt
cccaaagatttctctctgctgactgttgtccggacccgtcctggcctccaggctcccctc
ctgactctctacagtgcccagggtgtccaacagctgggtctggagcttggacgacctgtt
cgctttctatatgaagaccagactggacggccgcaacccccggcccaaccagtcttccga
ggcctcagtctagctgatggcaagtggcaccgtgtggctgtggcagtgaaaggccagtct
gtcaccctcattgttgactgcaagaagcgagtcacccggccccttccccgaagtgctcgt
cctgtgttggacacccgtggggtggtgatctttggtgcccgtatcctggatgaagaagtc
tttgagggtgatgtccaggagcttctcattgttccaggagtccaagccgcctaccaatcc
tgtgaacagaaggatctggaatgtgaagggagccagagggagagacctcagaaccagcag
tctcacagagcccagagatctccaaagcagcaaccatcaagacttcataggccacaaaac
caggaaccccagcagcagcccactgagtctctctactatgactacgagcccccctattcc
gatgtgatgactactgggaccacccctgattatcaggaccccaccccaggtgaagaggaa
gaagtcctggagtccagccccttaccactcccagaggaggagcagacagatctccaggtc
ccccccacagctgacaggttcctggcagaggagtatggggagggtggcacagacccccca
gcagggctctacgattacacctatggctatggggacgattatcgtgaggagacggagctt
ggccctgccctctccgcggagacagcccactcaggagccgctgcccttggaccccggggg
ctgaagggagaaaagggtgagcctgcagtgctggaacctggtatgtttgtggagggaccc
cctggcccagaaggccctgcgggattggctggtcctcctggcatccaggggaacccaggc
ccagttggagaccctggagagagggggcctcctggccgagcaggacttcctggatctgat
ggggcccctggccctcctggcacatccctcatgctcccattccggtttggtagtggtgga
ggtgacaagggccctgtggtggcagcccaagaagctcaggcccaggcgattctgcagcag
gcacggctggcgctccgtggaccccctggccccatgggatacacaggccgtcctggaccc
ctgggacagcctgggagccctggcctaaaaggagaatctggagacctaggacctcagggg
cctagaggacctcagggtctcacaggccctcctggcaaggctgggcgaaggggacgagca
ggtgctgacggagcccgagggatgcctggagaacctggagtgaagggtgaccgaggtttt
gatggactcccaggactacctggggagaaaggccataggggtgatactggtgcccagggc
cttcctgggccccctggtgaagatggagatcggggagatgatggggagattgggcctcgg
gggctgcctggagagtcgggaccccgaggacttcttggtcccaaaggcccccctggtatt
cctgggcccccgggagtccgaggcatggatggtccccacggccccaaagggagcttggga
ccccagggagagccaggacctcctggacaacagggcactcctgggacccagggtctccct
gggcctcagggtgccatcggccctcatggagagaagggtcctcgagggaaaccaggcctc
cctggcatgcctggctcagatggacccccgggtcaccctgggaaggaaggtccccctgga
accaaaggaaaccagggtccttctggacctcagggtcctctaggttacccaggacctcga
ggtgtcaagggtgtggatggaattcggggtctgaagggccataagggtgaaaagggtgag
gacggctttcctgggttcaaaggtgacataggtgtgaaaggtgacaggggtgaagttgga
gtccctggttccaggggagaagatggccccgaagggccgaagggacgcactggacctact
ggagaccctgggccccctggtctcatgggcgaaaagggcaagctgggtgttcctggtctg
cctggctaccctggacgacagggtcccaagggatctctgggatttcctggttttcctgga
gccagtggagagaagggagcccggggcctgtctggaaaatcaggacctcggggagagcgg
ggacccacgggtccacggggtcagcgggggccccgaggtgccactgggaagtctggagca
aagggaacatcaggtggtgatggcccccatggcccccctggagagaggggtctccctgga
ccgcagggcccaaatggatttcctggccccaaaggccccccaggcccccctgggaaagat
gggctgccaggacatccaggccagagaggagaagtgggtttccaagggaagacgggtcca
cctggccctcctggagtggtgggacctcagggagcagcaggagaaagcggccccatgggt
gagaggggtcacccaggccccccagggcctcctggagagcagggactgcctggcacagct
gggaaagaaggcacaaagggtgaccctggtccccctggagccccagggaaagatggtcct
gctggactaaggggcttcccaggagagcgaggcctcccaggcactgctggtggacctggt
ttgaaggggaatgaaggtccagctggcccccctggccctgcaggctcccctggggagcga
ggtacagcaggatctgggggacccattggtcccccagggcgtccgggtccacaaggtccc
cctggagcagcaggcgagaagggcgtcccgggagagaaaggccccattggtcccactggc
cgtgatgggatacagggtcctgtggggcttcctggtcctgctggacctccgggtgtggct
ggagaggatggagacaagggtgaggttggagacccgggtcagaagggcaccaaagggaac
aagggcgaacatggccctcctggaccccctgggcccatcggtcctgtggggcagcctgga
gcagcgggagcagatggggagcctggagctcgggggccccagggacactttggagccaaa
ggtgatgaaggaacaagaggattcaatgggcccccaggacccattggcctacagggcttg
ccaggcccctctggggagaaaggagaaacaggagacgtgggtcctatgggcccacctggc
cccccaggacctcgaggcccagctggacccaatggtgctgacggcccacaaggtcccccg
ggaggtgttgggaacctgggcccccctggagagaagggggagccaggagagtcagggtct
ccaggggtccagggagagccaggtgtcaagggtccacgtggggaacgtggagagaaagga
gagtcggggcagccaggagaggcaggaccaccagggcctaaaggccccacaggcgatgat
ggccccaaagggaatcccggtcctgttggttttcctggtgaccctggcccccctggggaa
ggtggccctcggggccaggatggtgctaagggtgaccgaggagaagacggcgagccagga
cagcctggatcccctggacccactggggagaatggaccccctggaccacttggaaagcgg
ggtcctgctggcacgcctggtccagaggggcgacaaggagagaagggagccaagggagat
cctggtgctgtgggtgcccccgggaagacaggctctgtgggtcctgcaggcccagcaggc
aagcctggccctgatggtctgagggggctcccaggtgcagtgggtcaacaagggcgtcct
ggagccacaggccaggctgggcccccaggtcctgtgggacccccagggcttcctggcctc
cgaggtgatgctggagccaagggagagaagggtcacccaggtctcattggactcatcggg
ccccctggagagcaaggagagaagggtgatcgaggacttcctggccctcagggctcccct
ggacagaagggagagacgggcatcccaggagcatctggtcccattggtcctggagggccc
cctggtctccctggacctgctggccccaaaggagccaaaggagccacaggcccagctgga
cccaagggagagaagggcgtccagggtcctccaggacacccgggccctctgggtgaggtg
atccaaccgctgcccatccagatgcccaagaagactcgacgctcagtggatggaggccgc
ctgatgcaggaagacgaggccatgccaacagggggtgccccaggcagtcctagggggctg
gaggagatctttggctcacttgactccctgagggaggagattgagcagatgaggagacca
acagggacccaggacagccctgctcgcacctgccaggacctgaagctgtgccatcctgag
ctgcctgatggagagtactgggtggaccccaaccagggctgtgctcgggatgctttccgg
gttttctgcaactttaccgcaggaggggagacgtgtgtgacacccagggacgacgtcaca
cagttctcttacgtggactcagagggctccctggtaggtgtggtccagcttaccttcctg
cgcctgctcagtgtctcggcccatcaggacgtctcttacccctgctctggagcatcgcgt
gaaggtcccctgaggctccggggggccaatgaggatgagctaagcccagagaccagcccc
tatgtcaaagaattccgagacggctgtcagacacagcaaggccggacagtgctggaagtg
cgcacgcctgtgctggagcagctgccggtgctggacgcctccttctcagacctgggggcc
cccccgaggcggggaggggtgctgctggggcctgtctgcttcatgggctag
DBGET
integrated database retrieval system
