Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101958259
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Entry
101958259 CDS
T10664
Symbol
Tarbp1
Name
(RefSeq) probable methyltransferase TARBP1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
iti03016
]
101958259 (Tarbp1)
03036 Chromosome and associated proteins [BR:
iti03036
]
101958259 (Tarbp1)
Enzymes [BR:
iti01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
101958259 (Tarbp1)
Transfer RNA biogenesis [BR:
iti03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
101958259 (Tarbp1)
Chromosome and associated proteins [BR:
iti03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
101958259 (Tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
101958259
NCBI-ProteinID:
XP_005320468
LinkDB
All DBs
Position
Unknown
AA seq
1382 aa
AA seq
DB search
MEGVLAEVLLEQSWDPRALFGTLCRGEASAERVETLRFLLQRGLGRAEDALTRKRARYLL
QRAVEVSAELGADCTCDAHGGTGPSLFWWSEKKKDELLKFWENYILLMETLEGNQIHVIK
PVLPKLNNLFEYAVSEEHGCWLFHPSWHMCVYKRMFESENKILTKEGVLHFLELYESECL
PFSPDFSEFIIGPLMDALSESSLYGRSPGQLVGSGSPLGLKLQKFLVTYVSLLPEEIKSG
FLLRFLQKMTSRHWCAVPVLFLSRALASVPRCKALGVEGLLALRDVLRCTMVTHQVLLRG
AAQCYLLQAALRLVDVEQVSLCDVSALLMSLRQEESLGRGTLLWTELCDWLRENELYFRQ
PSASGSQGLQEASLATYVKNLVQEYVRSPAWEAGEGGLMPDGLEARLTATMVLLAVDVEG
KKAQYSEKQRTQNMLRLFLDPLLGALMKFGTNAYVPVPKTDRCLQLLLMLLHTCTSRGSS
TQEDEVSVLLQSLLMSASESVSEFILRRLTMDELRTVSDLDRCHLYLMVLTELIHLQLKL
GWKVGASICRVISPLKNACIRHLQETDSGQEPTLARQIQRVASMATLARVCEIVDLQQES
LDMGPLERLLCTLPLNQTLQKPCAEDPESSSFFEESSPCQGWGKIVAQYVHDQWVCLSFL
LRRCHPLEPAAEGDKLEPSLPSVRTPTQILCAALDALSLLPSDRVSPVFCCMKTLVPQLL
TSSESLCVESFDVAWRVLTSLSNTQLTFWPNLRAFVQFVFDNTILSTAAKTKGQAYFRIK
EIMYKIIEMSTVKTGVFNTLMSHCCQSWLVSPASGPQGSLSSARHYSELILEACTFGTVF
RRDQRLIQDVQTFIESLGHDCAANVVMESTKREDCYVRVCAIKFLCLLDCSNTAHKSFME
DLAIKLLDKDEQVSQSRDRYYQNSLQHRVKNRIWQVLLTLFPRFDQNFLNEIIDKIFQAG
FINNQASIKYFIEWIIILILHKFPQFLPKFWDCFSYGEEKLKTSICTFLSVLSHLDIIIQ
NIPEKRRVLKQALLIAMKWGLSHNFSIRLYALIALKKVWAVCKALCVEECDAWTALIECS
LSQVESMHGAGNAKKNWQRIQDHFFFATFHPLEDYCLETIFYTLPRLSGVIEEEWITLDR
FSSFTDVPSGSGPLWCLSRTPLYELNPGDWSQQDAGTGSREADGPSEQADVQKKIIPWGH
DLLDTDLELVLQDRAAKLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVSNLHC
VRDKQFQHLSVSAEQWLPLVEVKPHQLPSYLQQKRAAGYTVIGVEQTAHSSDLAQFCFPE
KSLLLLGNEREGIPANLLQQLDMCVEIPQQGVIRSLNVHVSGALLIWEYTRQQLLRRTGA
SS
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggaaggggtgctcgcggaagtcctgctggagcagagctgggacccccgggccctgttc
gggacgctgtgccgaggggaagcgtccgcggagcgcgtggagacgctgcgcttccttctg
cagcggggcctgggccgcgcggaggacgccctgacgcgcaagcgcgcgcgctatctgctg
cagagggccgtggaggtgtccgcggagctgggcgccgactgcacctgcgacgctcacggg
ggaacaggcccaagtctgttttggtggtctgagaagaaaaaagatgagcttctaaaattt
tgggaaaattatattttactcatggaaactctagaaggaaatcagatacatgttataaag
ccagtcttaccaaagctaaacaatctgtttgaatatgcagtgtcagaggaacatggctgc
tggctctttcacccctcctggcacatgtgtgtttataaaagaatgtttgagagtgagaat
aaaatcctgaccaaagaaggtgttctccactttctggagctgtatgaatctgagtgtctt
ccattttcaccagacttttccgagtttattattggaccattaatggatgccctttcagag
agctctctctatggcaggtccccaggccagctggtaggaagtggttctccattgggatta
aagttacagaagtttttagtcacttatgtttctcttcttccagaagaaataaagagtggc
tttctgctcaggttccttcagaagatgacaagcaggcactggtgtgcagtgcctgtgctc
tttctgtccagggctctggcgagtgtcccgcggtgcaaggccctgggagtggaagggctg
ctggccctcagggacgttcttcggtgcaccatggtcacacaccaggtcctgctgcggggt
gcagcacagtgctatttacttcaggcggctctgcgtttggtggacgtggagcaagtgtcc
ctctgcgatgtctctgcactcctcatgtctctgagacaggaggaatccttaggacgagga
actctgctatggacagagctctgtgactggctgcgtgagaacgagctgtacttcaggcaa
ccctctgccagtggctcccagggcctgcaggaggcatccttggccacatacgtgaagaac
cttgtccaggagtacgtgaggtcccctgcctgggaagcaggagaaggcggcctcatgcct
gatgggctagaggcccggctgacggccacgatggtgttgctggcggtggatgtggaagga
aagaaggcccaatacagtgaaaagcagaggacacagaacatgttgaggctgttcttggat
cccctgctgggagccctgatgaagttcggtacaaatgcctatgtgccagtgcccaagact
gaccggtgtctgcagctgctgctgatgttgttgcacacgtgcacgtcgaggggctccagc
acccaggaagacgaggtgtccgtgcttctgcagagcctcctcatgtccgcctcagagagc
gtgtccgagttcattctcaggagactcaccatggatgagcttcgcactgtttcagatctc
gaccgttgccacttgtacctgatggtcctaactgagctcatacatctccagctgaagttg
gggtggaaagtgggtgcctctatctgcagagttatttctcctttgaagaacgcatgcatt
cggcaccttcaggagaccgacagtggacaggagcccacacttgctcgtcagatccagaga
gtggctagcatggccaccttggccagggtgtgcgagatagtggacctgcagcaggagtcc
ctggacatggggcccctggaaaggttgctttgcactcttccacttaaccagactctgcag
aagccctgtgcagaggacccagagagcagcagtttttttgaggagtcatcgccttgccaa
ggatgggggaagattgtagcccagtatgtccacgatcagtgggtctgcctctccttcctg
ttgagacggtgccaccccctcgagccagctgcagaaggagacaagctggagccctcactg
ccctctgtgcgaacaccaacacagatcctgtgcgctgcgctggatgccctctctcttttg
ccctctgaccgggtctcacccgtgttctgctgcatgaagactctggtcccccagctgctg
acctcctccgagtcgctctgtgtggagtccttcgacgtggcctggagagtcctgacctcc
ttgagcaacacccagctgacgttctggcccaacttgagagctttcgttcagtttgttttt
gataataccattctctccactgctgcaaaaaccaagggccaggcatatttcaggataaaa
gagattatgtacaaaatcattgaaatgtctactgtaaaaaccggggtcttcaatacactg
atgagtcactgctgccagtcatggctggtgtctcctgccagcgggccccaggggtctctg
tccagtgccaggcactacagtgaactcatcctggaggcatgtacatttggaactgtgttc
aggcgtgatcagagactcattcaggatgtacagaccttcatagagagtctgggacatgac
tgtgcagccaatgttgtcatggagagtactaaaagggaagactgttatgtgagggtctgt
gccatcaaattcctgtgtctgttagactgctccaacacggcccacaagtcattcatggag
gatcttgcaatcaagctgttggacaaagacgagcaggtgtcccagtccagagaccgctac
taccagaactctctccagcaccgggtgaagaaccggatatggcaggtgctactcacgctc
ttccccaggtttgaccagaatttcttgaatgagattattgacaagattttccaagctggt
tttatcaacaatcaagcatctataaaatattttatagaatggatcattatattgattctt
cataagttccctcagtttcttccaaagttctgggattgtttttcttatggtgaagaaaaa
cttaaaacaagtatttgtacatttttatctgttttgtcacatttggacattatcattcaa
aatattccagaaaagaggcgagtactaaagcaggccctcctcattgcaatgaaatggggt
ctcagccacaactttagcatccggctgtacgctctgatagctctgaagaaggtctgggca
gtgtgcaaagccctctgcgtggaggagtgtgacgcgtggacggctctcatagagtgtagt
ctcagccaggtggagagcatgcatggtgcagggaatgccaagaagaactggcagcgcatc
caggaccacttcttctttgccacatttcaccccctggaggattactgtctggagaccatc
ttttacaccctcccacggctctcgggcgtcattgaagaggagtggatcacccttgacaga
ttttccagcttcacagatgtcccttcaggttcagggcccctgtggtgcctttctcggact
ccgctctatgagctaaatcccggggactggtcccagcaggacgcaggcactggctcaagg
gaagcagatggcccttctgagcaggctgatgtgcagaagaagatcatcccgtggggacac
gacctcctcgacacagacctggagcttgtgctccaggaccgtgctgccaaacttggaaag
tccatcagcagactgattgtagtggcctcgctaattgataaaccaactaatttaggaggc
ctgtgccggacctgtgaggtgttcggggcctcagtgctggtggtcagcaaccttcattgt
gtccgtgacaagcagtttcagcacctcagtgtctcagctgaacagtggcttcctctggtg
gaggtgaagccgcatcagctccctagttatctgcaacagaaaagggcagcaggttacacg
gtcattggtgtagagcagactgcccacagctcagacttggcccagttctgcttccctgag
aagtcgctgctcctattgggcaatgaacgggaaggcattcctgccaaccttctacagcag
ctggacatgtgtgtggagattccccagcagggcgtcatccgctcactgaacgtgcacgtg
agcggggccctgctgatctgggagtacaccaggcagcagctgctcaggcgtacaggagcc
tcatcgtga
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