Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101958587
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Entry
101958587 CDS
T10664
Symbol
Rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04140
Autophagy - animal
iti04211
Longevity regulating pathway
iti05010
Alzheimer disease
iti05014
Amyotrophic lateral sclerosis
iti05016
Huntington disease
iti05017
Spinocerebellar ataxia
iti05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
101958587 (Rb1cc1)
09150 Organismal Systems
09149 Aging
04211 Longevity regulating pathway
101958587 (Rb1cc1)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
101958587 (Rb1cc1)
05014 Amyotrophic lateral sclerosis
101958587 (Rb1cc1)
05016 Huntington disease
101958587 (Rb1cc1)
05017 Spinocerebellar ataxia
101958587 (Rb1cc1)
05022 Pathways of neurodegeneration - multiple diseases
101958587 (Rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
iti01009
]
101958587 (Rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
iti04131
]
101958587 (Rb1cc1)
03029 Mitochondrial biogenesis [BR:
iti03029
]
101958587 (Rb1cc1)
Protein phosphatases and associated proteins [BR:
iti01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
101958587 (Rb1cc1)
Membrane trafficking [BR:
iti04131
]
Autophagy
Autophagosome formation proteins
ULK complex
101958587 (Rb1cc1)
Mitochondrial biogenesis [BR:
iti03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
101958587 (Rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
Jag_N
Motif
Other DBs
NCBI-GeneID:
101958587
NCBI-ProteinID:
XP_005332367
UniProt:
I3M1L5
LinkDB
All DBs
Position
Unknown
AA seq
1593 aa
AA seq
DB search
MKLYVFLVNTGTTLTFDTELTVQTVADLKHAIQSKYKIAIQHQVLVVNGGECMAADRRVC
TYSAGTDTNPIFLFNKEMILCDRAPAIPKTTFSTENDMEIKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCSNSYQKLLFKFESIYSNYLQ
SIEDIKLKLTHLGTAVSVMAKIPLLECLTRHSYRECLGRLDSLNENEGSEKAEMKRSTEL
VLSPDMPRTTNTSLLTSFHKSVEHVAPDTTDDESGKEIRESCQSTVQQDETSVDTKDGDL
PFFNVSLLDWINVQDRPNDVESLVRKCFDSMSRLDPKIIRPFIVECHQTIAKLDNQNMKA
IKGLEDRLYALDQMIASCGRLVNEQKELAQGFLANQMRAENLKDASVLPDLCLSHANQLM
IMLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEKLQALLRLVIELLE
RVKIVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAGALVKDGKRLYEAEKSKRESFGKL
FRKSFLRNRLFRGLDSWPPSFCTQKPRKFDCELPDISLKDLQFLQSFCPSEVQPFLRVPL
LCDFEPLHQHVLALHNLVKAAQSLDEMSQTITDLLNEQKASVSQASPQSTSSPRIESATG
IATTTSPRTPPPLAVQDPLCPAVCPLEELSPDSIDAHTFDFETIPHPNIEQTIHQVSLDL
DSLAESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVINAIDSRRMQGTN
TCGKEDFGDHASLNVQLEKCRVVAQDSHCSIQTIKEDLCHFRTFVQKEQCDFSNSLKCTA
LEIRNIIEKVKCSLEITLKEKHQKELQSLKSEYEGKLNALIKESEENENKIKKLKGDLVC
LEEVLQNKDNEFALVKHEKEVVICLQNEKDQKLLEMENIMHTQNCEIRELKQSREVVLED
LKKLHVENDEKIQLLRTELQCLEQSHLKELEDTLHVRHTQEFEKVMTDHQVSLEKLKEEN
QQRIVQIQESHAMVIQEKEQQLQELKVKVSDLSDMRCKLEVELALKEAETDEIKILLEES
RTQQKETLKSLLEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLMTIEKDQCISELI
SRHEEESNILKAELAKVTSLHHQAFEIEKNLKEQIVELQSKLDSELSALEKQKEEKITQQ
EEKYEAIIQNLEKDKERLVMSHDQDREQLIQKLNCEKDEAIQAALKEFKLEREVVEKELL
EKVKHLENQIAQSPAIDSTREDSSSLVAELQEKLQVEKAKFLEQLEEQEKRKNEEMQNVR
TSLIAEQQTNFNTVLTREKLRKENIINDLSDKLKTTMQQQERDKDLIESLSEDRARLLEE
KKKLEEEVSKLRSSSFVPSAYVTTAPELYGACAPELPGETERSAMETTDEGRVDSAMETS
MMSVQENVPMLSEEKQRIMLLERTLQLKEEENKRLNQRLMSQSMSSVSSRHSEKIAIRDF
QVGDLVLIILDERHDNYVLFTVSPTLYFLHSESLPALDLKPGEGASGASRRPWVLGKVME
KEYCQAKKAQNRFKVPLGTKFYRVKAVSWNKKV
NT seq
4782 nt
NT seq
+upstream
nt +downstream
nt
atgaagttatatgtgtttctggttaatactggaactactctaacatttgatactgaactc
acagtacaaactgtggcagaccttaaacatgccattcaaagcaaatacaagattgctatt
cagcatcaggtacttgtggtcaatggaggagaatgcatggctgcagatcgaagagtatgc
acctacagcgctgggacggacacaaatccaatttttctttttaacaaagaaatgatctta
tgtgaccgtgcacctgctattcctaaaacgacgttttcaacagaaaatgacatggaaata
aaagttgaagagtctcttatgatgcctgcagtttttcatactgttgcttcaaggacacaa
cttgcagtggaaatgtatgaagttgccaagaaactttgttcattttgcgaaggtcttgtc
catgatgaacatcttcaacaccaaggctgggctgcaatcatggccaatctggaggactgt
tcaaattcataccaaaagctacttttcaaatttgaaagtatttattcaaattatctgcaa
tccatagaagacatcaagttaaaacttactcatttaggaactgcggtttcagtaatggcc
aagattccactgttggagtgcctaaccagacatagttacagggaatgtttgggaagactg
gattctttaaatgaaaatgaaggctcagaaaaggctgagatgaaaagatccactgaactg
gtgctttctcctgatatgcctagaacaactaacacttccttgttaacctcatttcacaag
tcagtggaacatgtagccccagataccacagacgatgaaagtggcaaagaaattagggaa
tcttgtcaaagtactgtccagcaagatgaaacttcagtagatactaaagacggtgatctg
cctttttttaatgtttctttgttagactggattaatgttcaagatagacctaacgatgtg
gaatctttggtcaggaagtgctttgattctatgagcaggcttgatccaaagattattcgc
ccatttatagttgaatgccatcaaacaattgccaaacttgataatcagaatatgaaagcc
attaaagggcttgaagatcggctatatgcgctggaccagatgattgctagctgtggccgg
ctggtgaatgaacagaaagagctcgctcagggatttttagctaatcagatgagagctgaa
aacttgaaggatgcatctgtattacctgatttgtgcctgagtcatgcaaatcagttgatg
attatgttgcaaaatcatagaaaactgttggatattaaacagaagtgtaccactgccaaa
caagaactagcaaataatctacatgtcagactaaagtggtgttgctttgtgatgctacat
gctgatcaagatggagagaaattgcaagctttgctccgtcttgtaatagagctgttagaa
agagtcaaaattgttgaagctcttagtacagttcctcagatgtactgcttagctgttgtt
gaggttgtgaggagaaaaatgttcattaaacactacagggagtgggctggtgctttagtc
aaagatggaaagcgattgtatgaagctgagaagtctaaaagggaatcctttgggaaatta
tttaggaagtcttttttaagaaaccgtctgtttcggggactggactcctggcctccttcc
ttttgtactcagaagcctcgaaagtttgactgtgaactcccagatatttcattaaaagat
ttacagtttcttcaatcattttgtccctcagaagttcagccattcctcagggtcccttta
ctttgtgactttgaacctctacaccagcatgtacttgccctacataatttggtaaaggca
gcacaaagtttggatgaaatgtcacagaccattacagatctactgaatgaacaaaaggca
tctgtgagtcaggcatccccacagtctacttcttccccacggatagaaagtgcaacagga
attgcaactactacctcaccgagaactcctccaccacttgctgttcaggaccccttatgt
cctgcagtatgtcccttggaagaattatctccagatagcattgatgcacatacatttgat
tttgaaactatcccccatccaaacatagaacagactatacaccaagtttctttagacttg
gattcattggcagagagtcctgaatcagattttatgtctgccgtgaatgagtttgtgata
gaagaaaatttatcttctcctaatcctataagtgatcctcagagtccagagatgatggtg
gaatcactttattcatcagttatcaatgcaatagatagtagacgtatgcagggtacaaac
acatgtggtaaagaggattttggagatcatgcttctctgaatgttcaactggaaaaatgt
agagttgttgcccaggactctcactgcagtatacaaaccatcaaggaagacctttgccac
ttccgaacatttgtacaaaaagaacagtgtgacttctcaaattctttaaaatgtacagct
ttggaaataagaaacattattgaaaaagtaaaatgttctctggaaataacactaaaagaa
aaacatcaaaaagaactacagtctttaaaaagtgaatatgaaggtaagctcaatgcacta
ataaaagaaagtgaagaaaatgaaaacaaaataaaaaaattgaaaggagacctagtatgc
cttgaggaagttttacaaaataaagacaatgaatttgctttggttaaacatgaaaaagaa
gttgttatttgcctacagaatgaaaaggatcagaagttgttggagatggaaaatataatg
cacacacaaaattgtgaaatcagagagctgaaacaatcacgagaggtagttttagaagac
ttaaaaaagctccatgttgaaaatgatgagaagatacagttattgaggacagaacttcag
tgcttagaacaaagtcatctgaaagaattagaggacacactgcatgtcaggcatacacaa
gagtttgagaaagttatgacagaccaccaagtttctttggagaaattgaaagaagaaaat
caacaaagaattgttcagatacaagagtctcatgccatggttatccaggaaaaagaacag
caactgcaggaattaaaagtcaaggtttctgatttgtcagacatgagatgcaagttagag
gttgaacttgcattgaaggaagcagaaactgatgagataaaaattttgctagaagaaagc
agaacgcagcagaaggagaccttgaaatctctccttgaacaagagacagaaaatttgaga
acagaaataagtaaattaaaccaaaagattcaagataataatgaaaattatcaggtgggc
ttagctgagctaagaactttaatgacaattgaaaaagatcagtgcatttcagagttaatt
agtagacacgaagaagaatctaatattctgaaagccgaattagccaaagtaacatctttg
catcaccaagcattcgaaatagaaaaaaacttaaaagaacaaatagttgaactacagagt
aaattggactcagaattgagtgctcttgaaaaacaaaaagaagaaaaaatcacccaacaa
gaagagaaatatgaagctattatccagaaccttgagaaagacaaagagagattggtcatg
agccacgatcaagacagagaacagttaattcagaagcttaattgtgaaaaagatgaagct
attcaggctgccctgaaagaatttaaattggagagagaagttgttgagaaagagttatta
gaaaaagttaaacatcttgagaatcaaatagcacaaagtcctgctattgattctaccaga
gaggattcttcaagcttagttgctgaacttcaagaaaagcttcaggttgaaaaagctaag
tttctagaacaacttgaagagcaagaaaaaagaaaaaatgaagaaatgcaaaatgttcga
acatctttgattgctgaacaacaaaccaactttaatactgttttaacaagagaaaaattg
agaaaagaaaacataataaatgatcttagtgataagttaaaaactacaatgcagcaacaa
gaacgggataaagatttgatagagtcactttctgaagatcgagctcgtttgcttgaggaa
aagaaaaagcttgaagaagaagtcagtaagttgcgtagtagcagttttgttccttcagct
tatgtaacaacagccccagaactttatggagcttgtgcccctgaactcccaggtgaaact
gaaaggtcagccatggaaacaacagatgaaggaagagtggattcagcaatggagacaagc
atgatgtctgttcaagaaaatgtccctatgctgtctgaagaaaaacagaggataatgctc
ttagaacgaacactgcagttgaaggaagaagaaaataagcgattaaatcaaagattgatg
tcgcagagcatgtcttcagtatcttcacggcactctgaaaagatagcaattagagatttt
caggtgggagatttggtactcatcatcctagatgaacgtcatgacaattatgtattattt
actgttagtcctactttatattttctgcattcagagtctttgcctgccctggatctcaaa
ccaggtgagggtgcttcaggtgcatctagaagaccctgggtacttggaaaagtaatggaa
aaggaatactgtcaagccaaaaaggcacaaaacagatttaaagttcctttggggacaaaa
ttttacagagtgaaagctgtgtcatggaataagaaagtatag
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integrated database retrieval system
