Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101958967
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Entry
101958967 CDS
T10664
Symbol
Nup160
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup160
KO
K14303
nuclear pore complex protein Nup160
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03013
Nucleocytoplasmic transport
iti05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101958967 (Nup160)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
101958967 (Nup160)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iti03019
]
101958967 (Nup160)
03036 Chromosome and associated proteins [BR:
iti03036
]
101958967 (Nup160)
Messenger RNA biogenesis [BR:
iti03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101958967 (Nup160)
Chromosome and associated proteins [BR:
iti03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
101958967 (Nup160)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_Nup120_160
TPR_NUP160_120_M
TPR_Nup160_C
NUP160_helical
HEAT_Nup120
DUF3942
Motif
Other DBs
NCBI-GeneID:
101958967
NCBI-ProteinID:
XP_040139660
LinkDB
All DBs
Position
Unknown
AA seq
1471 aa
AA seq
DB search
METSPAPPCRPEASSARLPAPRSEVQQEEAIPQRPPSLSRERPTKNPETRLLGFRSQHLS
AAPLAPPPEVTTTARPAXCPVGPSGGGGKMAAAGSLERSFVELSGTERERPRRFREFTVC
GVGTTNPVAGTVKYSESAGGFFYVESGKLLSVTRNRFIHWKISADILELVEESLDLNLLN
NAVRLKFQNCNILPGGVYVSETQNHVIILILTNQTVHRLLLPHPSRMYRNELVIESQMQS
IFTDIGKVDFRDPCNYQLIPTVPGLCPNSTTSAAWLSSDGEALFALPSASGGIFVLKLPP
HDISGIVSIVELKQSSVMQRLLTGWMPTAIRGDQGPSDRALSLAVHCVEHDAFIFALCQD
HKLRMWSYKDQMCLMIADMLEYVPVNKDLRLTAGTGHKLRLAYSPSMGLYLGIYMHAPKR
GQFCIFQLVSTENNRYSLDHISSLFTSQETLIDFALTSTDIWALWHDVENQTTVKYINFE
HNVAGQWNPVFMQPLPEEEIVIRDDQDPREMYLRSLFTPGRFINAALCKALQIFCRGTER
NLDLSWSELKKEVTLAVESELQGSVTEYEFSREAFRNLQQEFWCKFYACCLQYQEALSQP
LALHLNPHTNMVCLLKKGYLSFLVPSSLVDHLYLLSDENLVTEDETTISDDVDVARDVVC
LIKCLRLIGESVTMDMSVMMEMSCYNLQSPEKAAEQILEDLITNDVENVMEDICSKLQEI
RNPVHAIGLLIREMDYETEVEMEKGFNSAQPLNVRMNLSQLYGSSSAGCIVCRGVYRIAS
TRFLICRDLLILQQLLMRLGDAVILGAGQLFQAQQDLLHRTAPLLLSYYLIKWGSQCLAT
DVPVDTLESNLQHLSVLELTDSGTLMTNKFVSSPQTIVELFFQEVARKQIISHLFSQPKA
PLNQTGLNWPEIIIAVTNYLLQLLYPFLKTTFYVLKDYIQLLHPWCQVNVGSCRFMLGRC
YLVTGEGQKALECFCQAASEVGKEEFLDRLIRSEDGDIVSSPRLQYYDKVLRLLDVVGLP
ELVIQLATSAITEAGDDWKSQATLRTCIFKHHLDLGHNSQAYEALTQIPDSSRQLDCLRQ
LVVVLCERSQLQDLVEFPYVNLHNEVVAIIESRARAVDLMTHNYYELLYAFHIYRHNYRK
AGTVMFEYGMRLGREVRTLRGLEKQGNCYLAAINCLRLIRPEYAWIVQPASGAVYDRPGA
SPKRNHDGECTAAPTNRQIEILELEDLEKECSLARIRLTLAQHDPSAVAVAGSSSAEEMV
ALLVQAGLFDTAISLCQTFKLPLTPVFEGLAFKYVKTYILIDLIFKSEIHLSFLMFSSAT
DEAWRLLSTYLDRYKVQNNLYHHCVINKLLSHGVPLPNWLINSYKKVDAAELLRLYLNYD
LLEEAVDLVSEYVDAVLGKGHQYFGIEFPLSATAPMVWLPYSSIDQLLQALGENSANSHN
IALSQKILDKLEDYQQKVDKATRDLLYRRNL
NT seq
4416 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaagccctgccccgccctgccgccctgaggcgtcctctgcacgcctcccagcc
ccgcgctcggaggtccagcaggaagaggcgattcctcagcgcccaccctcactctcccgt
gaaagacccacaaagaatccagagacccgccttctgggcttcaggtcgcagcacctgtct
gccgctccgctcgccccgcccccggaagtgacgacgactgcgcggcccgccncgtgtccc
gtcgggcctagcggcggcggcgggaagatggcggcggcgggatccctggaacggagcttc
gtagagctaagcgggaccgagcgcgaaaggccaaggcgctttcgagaattcacagtctgc
ggcgttgggactacaaatcccgtggctggaacggttaaatacagtgagagtgcagggggc
tttttctatgtggaaagcggcaagttgttgtccgtcaccagaaacagattcattcattgg
aagatctctgcagatatattggagctggtggaggagtcactggacctaaatctgttgaat
aatgcagttcgcctaaaattccagaattgtaacatcttacctggaggggtttatgtctca
gagacccagaatcatgtgataatcttaatattaaccaatcaaacagtgcacagattactt
ttaccacacccttcccggatgtataggaatgagttggtaatcgaaagtcagatgcagtca
atattcactgacattggaaaagttgatttcagggatccttgcaactatcaattaattcca
acagtacctggactatgccctaattctaccacctcagcagcctggcttagcagtgatggg
gaggcgctgtttgctctcccatctgcttctgggggcatctttgttcttaaactacctcct
catgacatttctggtatagtgtccattgtggaactgaaacagagttcagtgatgcagcga
ttgctcacagggtggatgccaacagctatcaggggtgatcaggggccttcagaccgtgca
ctcagtcttgctgttcattgtgtggagcacgatgccttcatctttgccctgtgtcaggac
cacaaactacgaatgtggtcttataaggaccaaatgtgtctgatgatagctgacatgctg
gagtatgtccctgtgaacaaagaccttcggctcactgctggaactgggcacaaattgcga
cttgcttattccccttccatgggactctacctaggaatatacatgcatgctccaaaacga
ggacagttctgcattttccagttggtgagcactgagaataaccgctatagtctagatcac
atttcctcattattcacttctcaggagacactgattgactttgccttaacctccacggat
atctgggccctgtggcatgatgtagagaaccaaacaactgtaaaatacatcaactttgaa
cataatgttgcaggtcagtggaatccagtttttatgcagcctttgccagaggaagaaatt
gtcatcagagatgatcaagaccccagggaaatgtatttgcggagtctgtttacaccagga
cgattcataaatgcagctttatgtaaagctttacagattttctgcagaggaactgagagg
aatttggatctttcgtggagtgaactaaaaaaagaagttacattagctgtcgaaagtgag
ctccaaggaagtgtaacagagtatgaattctccagagaggcatttagaaatttacaacag
gaattctggtgcaaattctacgcctgctgtcttcagtaccaagaagctctttcccagcct
cttgccctacatttgaatcctcacacaaatatggtgtgcctactgaaaaaagggtacctg
tcttttcttgtgccctcctccttagtggatcatctgtatctcctgtctgatgagaacctt
gtgacagaggatgagacaaccatttctgatgatgtggatgtcgctcgggatgtcgtatgt
cttataaaatgcctccggttgattggagagtctgtaactatggatatgtcagttatgatg
gaaatgagttgttacaacctacagtctccagaaaaggctgcagaacagattttggaagat
ttgatcactaatgacgtagaaaatgtgatggaagatatctgtagtaaactacaagagatt
aggaaccctgtccatgccattggacttcttatacgggaaatggattatgaaacagaagtg
gaaatggaaaaaggattcaattcagctcagcctttgaatgttcgaatgaacctttcccag
ctctatggtagtagctcagcggggtgtattgtgtgcagaggcgtatatagaattgctagt
actcgattcctgatctgccgagacctcttgatcttacagcaactactgatgaggctagga
gatgcagtgatcttgggagctggccagctctttcaagctcagcaagacctgcttcatcgg
acggctcccctgctcttatcctattacctcattaagtggggaagtcagtgcttggcaact
gatgttccagtggacacactggagtctaatctccaacacttgtcagtactggaactaact
gactctggtactttaatgacaaacaagtttgtatctagccctcagacaattgtggagtta
ttcttccaagaagttgcaagaaaacagattatatctcatctcttctctcaaccaaaggca
cctctgaaccaaacgggattgaattggcctgaaataattattgcagttaccaattattta
ttgcagcttttgtatccttttcttaaaactaccttttatgtccttaaggattatattcaa
ctgctacatccctggtgtcaagtcaatgttggttcctgtcgatttatgttgggacgttgt
tacctagttacaggcgaaggacaaaaggctttggaatgtttctgtcaggcagcatcagaa
gtgggcaaagaagaattcttagatcgattgatccgctcagaggatggggacattgtatcc
tcccccaggctgcagtattatgataaggttttacgtcttctagatgttgttggtttgcct
gagctggttattcagttggctacatcagcaataactgaagcaggtgatgactggaaaagt
caggctactttacggacatgcattttcaaacatcatttggatttgggtcacaacagccaa
gcatatgaggccttaacccaaattcctgactctagcaggcagttagattgtttacggcaa
ctagtggtagttctctgtgaacgctcacagctacaggatcttgtagaatttccttatgtg
aatctgcataatgaggttgtggcaataattgaatctcgtgctagagctgtggaccttatg
actcacaattactatgaacttctctatgcctttcacatctatcgccacaattaccgcaaa
gctggcacagtgatgtttgaatatggaatgcgtcttggcagagaggttcgaactctccgg
ggacttgagaagcaaggcaactgttatctggctgctatcaattgtttacggcttattcgt
ccagaatatgcatggattgtgcagccagcatctggtgcagtgtatgatcgccctggagca
tcccctaaaaggaatcatgatggagagtgcacagctgccccaaccaatcggcaaattgaa
atcttagaactggaagatctggagaaagagtgctccttggctcgaattcgtctcactctg
gctcagcatgatccgtcagcagttgcagttgcaggaagttcctcagcagaggagatggtt
gctctcttggttcaggctggcctctttgacaccgccatatcactctgtcagacttttaag
cttcccttaacaccagtctttgaggggcttgctttcaagtatgtaaaaacttatatttta
atagacttgattttcaaatctgaaattcatttgtcctttttgatgttttcaagtgctaca
gatgaagcgtggcgactattgtctacttatctagacaggtacaaagtgcagaataactta
tatcaccactgtgtaatcaataagctcttgtcccatggagtgcctctgcccaattggctt
ataaacagttacaagaaagttgatgctgctgagttgcttcgtctatacttgaactatgac
cttttggaagaagctgtggatttggtctctgagtatgtggatgctgtattgggaaaagga
catcagtactttggaattgagtttccactgtctgcaacagccccaatggtgtggctccca
tactcctctattgatcagcttctccaggctctgggagagaacagtgccaacagtcacaac
atcgcactatcccagaaaatacttgacaaattagaggactaccagcaaaaagttgataag
gcaacacgtgatttattataccgccggaacttgtga
DBGET
integrated database retrieval system
