Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101959153
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Entry
101959153 CDS
T10664
Symbol
Prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8 isoform X1
KO
K12856
pre-mRNA-processing factor 8
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101959153 (Prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
iti03041
]
101959153 (Prpf8)
Spliceosome [BR:
iti03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
101959153 (Prpf8)
Complex C
U5 SnRNP specific factors
101959153 (Prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
101959153
NCBI-ProteinID:
XP_005327961
UniProt:
I3M5L4
LinkDB
All DBs
Position
Unknown
AA seq
2335 aa
AA seq
DB search
MAGVFPYRGPGNPVPGPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
AAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccggagtatttccttaccgagggccgggtaacccagtgcccggccctctagccccg
ctgccggactacatgtcagaggagaagctgcaggagaaagccagaaaatggcagcagttg
caggccaaacggtatgcagaaaagcggaagtttggatttgtggatgctcagaaggaagat
atgcctccagaacatgtcaggaagatcattcgagaccacggagacatgaccaacagaaag
tttcgccatgacaaaagagtctatctgggtgccctaaagtacatgccccatgcggtcctc
aaactcctggagaatatgcctatgccttgggaacagatccgggatgtgcctgtgctgtac
catatcactggagccatttccttcgtcaatgagattccttgggtcattgagccagtctat
atctcccagtgggggtcaatgtggatcatgatgcgtcgagaaaaaagagacaggaggcat
tttaagaggatgcgcttccctccttttgatgatgaggagccccccttggactatgctgat
aacattttagatgttgagcctcttgaagccattcagctagagttggaccctgaggaggat
gcacctgtgttggactggttttatgatcaccagccattgagagacagtagaaagtatgtt
aatggctccacttaccagcgctggcagttcacactgcctatgatgtctactctataccgc
ctggccaatcagctcctaacagatttggtggacgacaattacttctatctttttgatcta
aaggccttctttacctccaaggcgcttaatatggccattcctggaggccccaaatttgaa
cctcttgttcgagacatcaacctacaggatgaagattggaatgaatttaatgatattaac
aaaatcattattcggcagcctatccgcactgaatataagattgcttttccttacctatac
aacaaccttccacatcacgttcatctcacctggtatcatactcctaatgttgtgttcatc
aaaactgaggatcctgatttgccagctttctactttgatcctttgatcaatccaatctct
cacaggcattctgtcaagagccaggaaccattgccagatgatgatgaagaatttgagctc
ccagagtttgtggagcccttcttgaaggacacacccctctatacagacaatacagccaat
ggcattgctctcctttgggccccacggcccttcaatcttcgctctggccgcacccgccgg
gctctggacataccccttgtcaagaattggtatcgggagcattgtcctgctgggcagcct
gtcaaagtgagagtctcttaccagaagctgcttaagtactatgtgctgaatgccttgaaa
catcgtccccctaaggctcaaaagaagaggtatctgttccgctccttcaaagctaccaaa
ttctttcagtccacaaagctggactgggtggaagttgggctgcaggtttgccgccagggc
tacaacatgctcaaccttctcattcaccgtaaaaaccttaactacctgcacctggactat
aacttcaacctcaaacctgtcaagacacttaccactaaggaaagaaagaaatctcgtttt
gggaatgctttccatttgtgtcgggaagtactgcgtttaactaagctggttgtagacagt
cacgtgcagtatcggttgggcaatgtggatgcctttcagctggcagatggattacagtat
atatttgcccatgtggggcagctgacaggcatgtatcgttacaaatacaaactgatgaga
cagatccgcatgtgcaaggacctgaagcatctcatctattaccgcttcaacacgggtcct
gtggggaagggtcctggctgtggcttctgggctgctggctggcgtgtctggctatttttc
atgcgtggcattactcctttgctagagcgatggctaggcaatctcctggcccggcagttt
gaaggccgacactcaaagggggtggcaaaaacagtaacgaagcagcgagtggagtcacat
tttgatcttgaacttcgggcagctgtgatgcatgacattctggatatgatgcctgagggg
atcaaacagaataaggcccggacaatcctgcagcatctcagcgaagcctggcgttgctgg
aaggccaacattccctggaaagtccccggactaccaacacccatagaaaatatgatcctt
cgatatgtgaaagccaaggctgactggtggaccaatactgcccactacaaccgggaacgg
atccgccgtggggccactgtagacaagactgtttgcaaaaagaacttgggtcgccttact
cgattgtacctgaaggcagaacaggagcgacagcacaattacctaaaggatgggccttac
atcacggcagaggaagcagtggcagtgtataccactactgtgcattggttggaaagccgg
aggttctcgcccattccattccccccactctcctataagcatgacaccaagttgctaatt
ttggctttggagcgactcaaggaagcttatagtgtgaagtctcgattaaaccagtctcag
agggaagagttaggtctgattgagcaagcctatgacaacccccatgaggcattgtctcgc
atcaagcgtcacctccttacacagagagcctttaaggaagtgggcattgaattcatggat
ctttatagtcacctggttccagtgtatgatgtggaaccactggagaagataactgatgcc
tacttggaccagtatctgtggtatgaagcagacaagcgccgccttttcccaccctggatc
aaacctgctgatacggaaccacctccactgcttgtttacaagtggtgccaaggcatcaat
aacttgcaggatgtgtgggaaaccagtgagggtgagtgcaatgtcatgctggaatcacgc
tttgagaaaatgtatgaaaagattgatttgaccctgctcaataggctgctgcgactcatt
gtggatcacaacatagctgactacatgacagctaagaacaatgttgtcatcaactataag
gatatgaaccatactaattcatacgggatcatcagaggactgcagtttgcctctttcatt
gtgcaatactatggtctggtgatggatttgctggtactgggattgcaccgggccagtgag
atggctgggccccctcagatgccaaatgactttcttagtttccaggacatagccactgaa
gctgctcatcccatccgactcttctgtagatacattgatcgaattcatattttcttcagg
ttcactgcagatgaggctcgggacctgatccagcgttacctaacagagcaccctgacccc
aacaatgaaaacatcgttggctataataacaagaaatgctggccccgagatgcccgtatg
cgcctcatgaagcatgatgtcaatttaggtcgagcagtattttgggacatcaagaaccgt
ctgccacgatcagtgactacagttcagtgggagaacagcttcgtatctgtgtatagtaaa
gacaaccctaacctgctgttcaacatgtgtggctttgagtgccgcatcctgcctaaatgc
cgcaccagctatgaggagtttacacacaaggatggggtctggaacctacagaatgaggtt
actaaggaacggacagctcagtgtttcctgcgtgtggatgatgagtcaatgcagcgattc
cacaaccgtgtacgtcaaattctgatggcttctggctctaccaccttcaccaagattgtg
aataagtggaatacagctctcattggccttatgacatactttcgggaggctgtggtgaac
actcaggaactcctagacttgcttgtgaagtgtgagaacaagatccagacacgtataaag
attggactcaactccaagatgccaagtcggttccctcctgttgtattctacacccctaag
gagttgggaggactgggcatgctgtcaatgggccatgtgctcattccccagtctgacctc
aggtggtccaagcagacagatgtaggtattacacactttcgttcaggaatgagtcatgaa
gaagaccaactgattcccaacttataccgctacatacagccatgggagagtgagttcatc
gattctcagcgggtctgggctgaatatgcactcaagagacaagaggccattgctcagaac
agacggctgacattagaagatctagaggactcttgggatcgtggcattcctcgaatcaat
actctcttccagaaggatcggcacacattagcttatgataagggttggcgtgtccgaact
gactttaagcagtaccaggttttgaagcaaaaccctttttggtggacacaccagcgacat
gatgggaagctctggaacctaaacaattaccgtacagatatgattcaagccctgggtggt
gtagaaggcattctggaacacacactgtttaagggcacttacttccctacctgggagggt
cttttctgggagaaggctagtggctttgaagaatctatgaagtggaagaagctaactaat
gctcagcgatcaggattgaaccagattcccaatcgaagattcaccctttggtggtcccca
accatcaatcgggccaatgtatatgtgggctttcaggtgcagctagacctgacaggtatc
ttcatgcatggcaagatccccacgttgaagatctctctcatccaaatctttcgagcccac
ttgtggcagaagatccatgagagcatcgtcatggatttgtgtcaggtatttgaccaggaa
ctggatgcactagaaatagagaccgtacaaaaggagacaatccatccccgaaagtcttat
aagatgaactcttcctgtgcagatatattgctttttgcctcctataagtggaatgtctct
cgaccctcattgctagcagattccaaggatgtgatggacagcaccaccactcagaagtat
tggatagacatccagttgcgctggggggactatgattcccatgacattgagcgctatgcc
cgggccaagttcctggactataccacagacaacatgagtatttacccttcgcctacaggt
gtgctcattgcaattgacttggcgtataatctgcacagtgcttatggaaactggttccca
ggcagcaagcctctcatacagcaggccatggccaagatcatgaaggcaaatcctgccttg
tatgtgttacgtgaacgaatccgcaaggggctacagctctattcatctgagcccactgag
ccgtatttgtcatctcagaactatggtgaactcttctctaaccagattatctggtttgta
gatgatactaatgtctacagagtaactatccacaagacctttgaagggaacttgacaacc
aaacccatcaatggggccatcttcatcttcaacccacggacagggcagctgtttctcaag
ataattcatacatctgtgtgggctggacagaagcgtttggggcagttggccaagtggaag
acagctgaagaagtagctgccctgatcagatctctgcctgtggaggagcagcccaagcaa
atcattgtcaccaggaagggcatgctggatcctttggaggtacacttgctggacttccct
aatattgtgatcaaaggatcggagcttcaactccccttccaggcttgtctaaaggtggaa
aagtttggggatctcatccttaaagccactgagccccagatggttctcttcaacctctat
gatgactggcttaagacaatctcatcttacacggctttctcccgtctcatcctgattctg
cgtgctctgcatgtgaacaatgaccgggcaaaagtaatcctgaagccagacaagactact
attacagaaccccaccacatctggcccaccctgactgacgaagagtggatcaaagtggag
gtgcagctcaaggatctgatcttggccgactatggcaagaaaaacaatgtgaatgtggca
tcactgacacagtcagaaattcgagacataatcttgggtatggagatctcagcaccatca
cagcagcgacagcagatagcagagatcgagaagcagacaaaggaacagtcacagctgact
gcaacacagactcgcactgtcaacaagcatggtgatgagatcatcacctccacaaccagc
aactatgaaactcagactttctcctcaaaaactgaatggagggtcagggccatctctgct
gccaatctgcacctacggaccaatcacatttatgtttcttctgatgacattaaagagact
ggttacacttatatccttcccaagaatgtgcttaagaagtttatctgcatctctgacctt
cgtgcccaaattgcagggtacctgtatggggtgagcccaccggataacccccaagtgaag
gaaatccgctgcatcgtgatggttccacagtggggtactcaccagactgtgcacctgcct
ggtcagctgccccagcatgagtacctcaaagagatggagccgttaggttggatccacact
cagcccaatgagtccccccagctgtcaccccaggatgtcaccacccatgccaaaatcatg
gctgacaacccatcttgggatggcgagaagaccattatcatcacctgcagcttcacacca
ggttcctgcacattgacagcctacaagttgacacccagtggctatgaatggggccgccag
aatacagacaaaggcaacaaccccaagggttatctaccctcacactatgagagggtccag
atgttgctgtcagaccgattccttggcttctttatggttcctgctcagtcctcatggaac
tacaactttatgggtgtccgacatgatcccaacatgaagtatgagctacagctggcaaac
cctaaagagttctaccatgaggtgcacagaccctcccacttcctcaactttgccctcctg
caagagggagaggtctactctgcagaccgcgaggacctatatgcctag
DBGET
integrated database retrieval system
