Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101959232
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Entry
101959232 CDS
T10664
Symbol
Pcdh1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
101959232 (Pcdh1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
iti01009
]
101959232 (Pcdh1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
iti04515
]
101959232 (Pcdh1)
Protein phosphatases and associated proteins [BR:
iti01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
101959232 (Pcdh1)
Cell adhesion molecules [BR:
iti04515
]
Cadherins
Protocadherins
101959232 (Pcdh1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
101959232
NCBI-ProteinID:
XP_040128223
LinkDB
All DBs
Position
Unknown
AA seq
1215 aa
AA seq
DB search
MGSLRPSPGPGGQRLLLPPLLLALLLLLAPSTGHATRVVYKVPEEQPPNTLIGSLAADYG
FPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGLRECQNQLPGEPCILEFEVSITD
LVQNGSPRLLEGQIEVQDINDNTPNFASPVITLAIPENTNIGSLFPIPLASDRDAGPNGV
ASYELQAGPEAQELFGLQVAEDQEEKQPQLIVMGNLDRERWDSYDLTIKVQDGGSPPRAS
SALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVIQVKANDSDQGANAEIDYTFHQA
PEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAKDRGANPKSARAQVVVTVKDMND
NAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVSDRDEGENAAVTCVVAGDVPFQL
RQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVDSGNPPLSSTNSLKVQVVDVNDN
APVFTQSITEVAFPENNKPGEVVAEVTASDADSGSNAELVYSLEPEPAAQGLFTISPENG
EIRVKTSLDREQRDSYELKVVAADRGSPSLQGTATVLVNVLDCNDNDPKFMLSGYNFSVM
ENMPALSPVGMVTVIDGDKGENARVQLSVEQDNGDFVIQNGTGTILSSLSFDREQQSTYT
FQLKAVDGGVPPRSAYVGVTINVLDENDNAPFITAPSNTSHRLLTPQTRLGETVSQVTAE
DIDSGVNAELTYSIAGGNPYGLFQIGPNSGAITLEKEIERRHHGLHRLVVKVSDRGKPPR
YGTALVHLYVNETLANRTLLETLLGHSLDTPLDIDIAGDPEYERSKQRGNILFGVVAGVV
AVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPKPSGKASKGNKSKGKKSKSPKPV
KPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQP
QSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDYSYRTNPPKYPSKQLPHRRVTFS
ATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLGPLALPEDHYERTTPDGSIGEME
HPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSSPSRRTKSSALKLSTFVPYQDRG
GQEPAGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHDSCKDSATLEEIPLTQTSDFPPS
ATPASAQTAKREIYL
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atggggtccctgaggcccagcccgggccctggggggcagcgattgctgctgccccccttg
ctgctggcactgctgctcctattggctccatccacaggccacgccactcgggtagtatac
aaggtaccagaggaacagccacccaacaccctcattgggagcctcgcagccgactatggc
tttccagatgtgggccacctgtacaaactagaggtaggtgccccataccttcgagtggat
ggcaagacgggtgatattttcaccactgagacctccattgaccgtgaggggcttcgtgaa
tgccagaaccagctccctggtgagccctgcatcctggagtttgaggtgtctatcacagac
ctcgtgcagaacggcagtccccggctgctagagggccagatagaggtacaggacatcaat
gacaacacacccaacttcgcctcaccagtcatcactctggccatccctgagaataccaac
atcggttcgctcttccctattccactggcttcagaccgtgatgctggccccaatggcgtg
gcatcctatgagcttcaggctgggcctgaggcccaggagctgtttgggctgcaggtggcc
gaggaccaggaggagaagcagccacagctcatcgtgatgggcaacctggaccgcgaacgc
tgggattcctacgacctcaccattaaggttcaggatggtggcagtcccccacgtgccagc
agtgccctgctgcgtgtcactgtgcttgacaccaatgacaacgctcccaagttcgagcgg
ccctcctatgaggccgagctgtctgagaatagtcccataggccactcggtcattcaggtg
aaagctaatgattcagatcaaggcgccaatgcagagatcgattacacgttccaccaggca
cctgaagttgtgaggcgacttctgcgactagacaggaacactggactcatcactgttcag
ggccccgtggaccgtgaggacctgagcactctgcgcttctctgtgcttgccaaggaccga
ggcgccaaccccaagagtgcccgtgcccaagtggttgtgactgtgaaggacatgaatgac
aatgctcccaccattgagatccgaggcataggactggtgacccaccaagatgggatggct
aacatctcagaggatgtggcggaggagacagccgtggctctggtacaggtatctgaccga
gatgagggagagaatgcagctgtcacctgtgtggtagcaggtgacgtgcccttccaactt
cgccaagccagtgagacgggcagtgacagcaagaagaagtacttcctgcagaccaccacc
ccacttgattacgagaaggtcaaagactacaccattgaaattgttgctgtggactctggc
aacccccctctctctagcactaactccctcaaggtgcaggtggtggatgtcaatgacaat
gcccctgtcttcacccagagcatcacggaggtggcctttccagaaaacaacaagcctggt
gaagtggtggctgaggtcactgccagcgatgctgactccggctctaatgcagagctggtt
tactctctggagcctgagccggctgcccagggcctcttcaccatctcacctgagaatgga
gaaatccgggtgaagacatcccttgatcgggaacagagagacagctatgagttgaaagta
gtggcagctgaccggggcagccccagcctccagggcacagccaccgtcctcgtcaatgtg
ctggactgcaatgataatgaccccaaatttatgctgagtggctacaacttctcagtgatg
gagaacatgccagcgctgagtccagtgggcatggtgactgtcatcgatggggacaagggg
gagaatgcccgggtgcagctttcagtggagcaagacaatggtgactttgttatccagaac
ggcacaggcaccatcctgtccagcctgagcttcgaccgagagcagcagagcacctacacc
ttccagctgaaggcggtggacggcggcgtcccacctcgctcagcttacgttggcgtcacc
atcaatgtactagatgagaatgacaacgcaccctttattactgccccctccaacacttcc
catcggctgctcaccccccagacacgtcttggtgagacggtcagccaggtgacagccgag
gacattgactctggtgtcaacgctgagctgacctacagcattgctggtggcaacccttat
ggactcttccagatcgggccaaattcaggtgccatcaccctggagaaggagattgagcgg
cgccaccacgggctgcaccgccttgtggtgaaggtcagtgaccgtggcaagcctccacgc
tacggcacagccttggtccatctttatgtcaatgagaccttagccaaccgcacactgcta
gagaccctactgggtcacagcctggacacaccgctggatatcgacattgctggggaccca
gaatatgagcgctccaagcagcgtggcaatatcctctttggtgtggtggctggtgtcgtg
gctgtggccttgctcatagccctggcagtgcttgtgcgctactgccggcagcgggaggcc
aagagtggctatcaggctggtaagaaagagaccaaggacctgtatgcccccaagcccagc
ggcaaagcctccaagggaaacaagagcaagggcaagaagagcaagtccccgaaacctgtg
aagccagtggaggacgaagatgaggccggattgcagaagtccctcaagttcaacttgatg
agtgacgcccctggggacagtccccgcatccacctgcccctcaactacccaccaggtagc
cctgacctgggccgccactaccgttctaactccccactgccttccatccagctgcagccc
cagtcaccctcggcctccaagaagcaccaagtggtgcaggacctgccgcctgcaaacaca
tttgtgggcaccggggacaccacgtccacgggctctgagcagtactccgactacagctac
cgcaccaacccccccaaataccccagcaagcagttacctcaccgtcgtgtcaccttctcg
gccaccagccaggctcaggagctgcaggacccatcccagcacagttactatgatagtggc
ctggaggaatctgagacaccatccagcaagtcatcctcggggccccgacttggtcccctg
gcactgcctgaggatcactatgaacgcaccacccccgatggcagcataggagagatggag
caccctgagaatgacctccgccctctgcctgatgttgccatgacgggcacgtgtacccgg
gagtgcagcgagtttggccactctgacacatgctggatgcctggccagtcatctcccagc
cgccggaccaagagcagcgccctcaaactctccaccttcgtgccttaccaggaccgagga
gggcaggagcctgcgggcgccggcagccccagccccccggaagaccggaacaccaaaacg
gcccccgtgcgcctcctgccctcctacagtgccttctcccacagtagccatgattcctgc
aaggactcggccaccttggaggaaatccccctgacccagacctcggacttcccaccctca
gccacaccggcatctgcccagacggccaagcgcgagatctacctgtga
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