Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101959579
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Entry
101959579 CDS
T10664
Symbol
Mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101959579 (Mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iti03019
]
101959579 (Mtrex)
03041 Spliceosome [BR:
iti03041
]
101959579 (Mtrex)
03009 Ribosome biogenesis [BR:
iti03009
]
101959579 (Mtrex)
03016 Transfer RNA biogenesis [BR:
iti03016
]
101959579 (Mtrex)
Enzymes [BR:
iti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101959579 (Mtrex)
Messenger RNA biogenesis [BR:
iti03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101959579 (Mtrex)
Spliceosome [BR:
iti03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101959579 (Mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
101959579 (Mtrex)
Ribosome biogenesis [BR:
iti03009
]
Eukaryotic type
Pre-60S particles
Helicases
101959579 (Mtrex)
Transfer RNA biogenesis [BR:
iti03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101959579 (Mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
101959579
NCBI-ProteinID:
XP_005319682
UniProt:
I3MG60
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAAATKKDKEKEKGKWKGLPGSAEKAGKRFDAKLQSESTTSG
KNKRDVDFEGTDETIFGKKPRIEESVTEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEQQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEDYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcatttggggatgagctgttcagcgtgttcgaagatgactccaccactgct
gccgcaaccaaaaaagacaaagaaaaggagaagggaaaatggaagggcttgccagggtct
gcagaaaaggccgggaaacgttttgatgccaaattgcaatcagagtcaactactagtgga
aaaaataagagagatgtggattttgaaggcacggatgaaaccatttttggaaagaagccc
aggatagaagagtcagtaactgaagacttaagtttggcagacctgatgcccagagttaag
gtacaatcagttgaaactgttgaaggatgtacacatgaggttgcacttcctgcagatgag
gattatttaccacttaaacctcgagtcggaaaagcagcaaaggagtacccgtttattctt
gatgctttccaaagagaagccattcagtgtgttgataacaatcagtctgttttagtatct
gcacatacatcagcagggaaaactgtatgtgctgagtatgccattgcattggccttaagg
gaaaagcagcgtgtaatatttaccagcccaattaaggctctgagtaaccagaagtaccgt
gaaatgtatgaagaatttcaagatgttggtctcatgactggagatgtgactattaatcct
acagcatcttgtcttgttatgactacagagattttaagaagtatgctgtacagaggttct
gaagttatgcgagaagttgcttgggtcatttttgatgaaatccattacatgagagattca
gagcgtggcgtagtatgggaggaaactattattttgcttcctgataatgttcactacgtc
tttctttcggctactattccaaatgcccgacagtttgctgaatggatttgccatttacat
aaacagccttgtcatgtcatttacacggattataggcctactccattgcaacactacatt
tttccagcagggggagatggccttcaccttgtggttgatgaaaatggtgacttcagagaa
gacaattttaatactgcaatgcaagtgcttcgagatgcaggtgatttggcaaaaggagac
cagaaggggcggaaaggaggaacaaaaggaccatcaaatgtgttcaagatagtgaaaatg
attatggaaagaaattttcaacctgtaattattttcagttttagtaagaaggattgtgaa
gcttatgctcttcaaatgaccaaattagatttcaacacagacgaagaaaagaagatggtt
gaagaagtattcagtaatgcaattgactgcttgtctgatgaagataaaaaactccctcag
gttgaacatgtacttcctcttttgaagcgagggattggtattcaccatggtggtttactt
cctattttgaaagaaactatagaaattctcttttctgaaggattgataaaggccttattt
gccacagagacttttgctatgggaattaacatgccagctagaactgttttatttacaaat
gcccgtaaatttgatgggaaggatttccgatggatttcctctggtgaatacattcagatg
tctgggcgtgctggaaggagaggaatggatgatagaggaattgtaattcttatggtagat
gaaaagatgagcccaacaattggaaaacaactacttaagggctcagctgatcctctaaat
agtgctttccatttgacttacaacatggttttaaacttactacgtgtagaagaaattaat
cctgagtatatgttggaaaaatccttctaccagtttcagcattatagagcaattccagga
gtagtagaaaaggtaaagaactcagaacaacagtataataaaatagtaattcccaatgaa
gaaagtgtagtaatctattataagattagacagcaacttgccaaactgggtaaagagatt
gaagattatattcataaaccaaaatactgcttaccatttctacagccaggccgtttggta
aaggtaaagaatgaaggagatgattttggctggggtgtagtggtgaatttttcaaaaaag
tcaaatgttaagcctaattctggtgaactggatcccttatatgtagtagaagtacttctg
cgctgtagcaaagagagcttgaaaaattcagctactgaggctgcaaaaccagctaaacct
gatgagaaaggagagatgcaggttgttccagttttggtacatctcctgtctgctattagc
agtgtcaggctttacattcctaaggaccttcggccagtggacaatagacaaagtgtttta
aaatcaatacaggaagttcagaagcgttttcctgatggtgttcctttattagatcctatt
gatgatatgggcattcaagatcaaggtttgaaaaaggtcattcagaaagtagaggctttt
gagcatcggatgtattctcatccacttcacaatgatccaaatttggaaactgtgtacaca
ctttgtgaaaaaaaagcacagattgcaatagatattaaatctgcaaaacgagaactgaag
aaagcaagaactgtcctacaaatggatgaactcaaatgtcgcaaacgtgttttaagaagg
ttgggatttgctacttcttctgatgtcatagagatgaaaggacgagtagcttgtgagata
agcagtgctgatgagctgcttctaactgagatgatgtttaatggacttttcaatgacctt
tctgcagaacaagcaacggcgttattaagctgctttgtgtttcaagagaattctagtgag
atgcccaaattgacagaacagttagcaggtccacttcgacaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagcaaaattggaaattgatgaggaaacttacctaagc
tcattcaaacctcacctaatggatgtggtatatacctgggcaactggagctacctttgcc
cacatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaattgcttcgacagatgtgtcaggcagcaaaagccattggaaatactgagctggaa
aataaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgccgctagcctc
tacttataa
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integrated database retrieval system
