Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101959601
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Entry
101959601 CDS
T10664
Symbol
Upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X2
KO
K14328
regulator of nonsense transcripts 3
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03013
Nucleocytoplasmic transport
iti03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
iti03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101959601 (Upf3a)
mRNA cycle factors
P-body specific factors
101959601 (Upf3a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
101959601
NCBI-ProteinID:
XP_005342403
LinkDB
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Position
Unknown
AA seq
435 aa
AA seq
DB search
MRSEKERAGGPGATVGTRGPGGREKLSAAEVQFRRESPRREPETPASSSGCGGGAGKPRE
EKRTALSKVVLRRLPPGLTKEQLEEQLHPLPAHDYFEVVAADLSLHPHLYSRAYINFRDP
DDILLFRDRFDGYVFIGNKGLEYPAVVEFAPFQKIAKKKLKKKDTKTGSIEDDPEYKQFL
ETYSVEEEKTSANPEILLGEVEAKTRELVARRTTPLLEYIKNRKLEKQRIREEKREERRR
RELEKKRLREEEKRKRKEEEKCKRKEADKQKKTAEKEVKIQLLKKPEKGEESTTEKPKER
GEEAGVGDGRREAHAPCTVMKTRLLESLPEALREKSQDDSDGEQRDLERRPRGRESEMLR
CHLDSSRKHGAHSEFDRFARRNEDELRWARGSTQDRGKKGRQDGGIPMETAERLAREKED
NGLAPRKERLGSKVL
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgcgctccgagaaggagcgggccggaggcccgggcgcgaccgttggtacccggggccct
ggcgggagggagaagctgtctgccgcggaagtccagttccgccgtgagtcaccacgacga
gaacccgagacgccagcctcctcctctggctgcgggggcggggccggtaagcctcgcgag
gagaagaggacggccctgagcaaggtggtcctcagacggctgccaccaggcctcacaaag
gagcagctggaggaacagctgcacccactgcctgcgcacgactactttgaggtggtggcc
gcagacctcagtctgcaccctcatctgtactccagagcatacattaattttagggaccct
gatgacatccttctgttcagagaccgttttgatggatatgtcttcattggcaataaaggc
ctggagtaccctgcagtggtggagtttgccccattccagaagatagccaaaaagaagctg
aagaaaaaagacactaagaccgggagcatcgaagatgatccagaatacaagcagttttta
gaaacatacagtgtggaggaagagaaaaccagtgccaatcctgaaatccttctgggagag
gtagaggcaaagacaagagaactcgttgctagaagaaccacgcctcttttggaatatatt
aaaaatagaaaattagaaaagcagagaattcgagaagagaagcgagaagaacggaggcgg
agagagctagaaaagaaacgtttgcgggaagaagaaaaaagaaagagaaaagaagaagaa
aaatgcaaaagaaaggaggcagataaacaaaagaagactgctgagaaagaagtgaagatc
cagcttcttaagaaaccagaaaaaggagaggaatcaaccactgagaaaccaaaagaaaga
ggagaagaagctggtgttggagatggcaggcgggaagcccacgccccctgcacagtgatg
aaaaccaggctcctggagagcctgccggaggcgctcagggagaagtcacaggatgacagt
gatggagagcaaagggacctggagagaagacctcgggggagagaatctgaaatgctgagg
tgccacctggacagcagcagaaaacatggtgctcactctgagtttgacaggtttgccagg
aggaacgaagatgagctgagatgggccagagggtccacccaagatagagggaagaagggg
cgccaggacgggggcatccccatggagacggcagagcggctggccagggagaaggaggac
aatggcctggcccccaggaaggagcgtctgggaagcaaggtgctctga
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