Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101959664
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Entry
101959664 CDS
T10664
Symbol
Arid1a
Name
(RefSeq) AT-rich interactive domain-containing protein 1A
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03082
ATP-dependent chromatin remodeling
iti04714
Thermogenesis
iti05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101959664 (Arid1a)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
101959664 (Arid1a)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
101959664 (Arid1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
iti03000
]
101959664 (Arid1a)
03021 Transcription machinery [BR:
iti03021
]
101959664 (Arid1a)
03036 Chromosome and associated proteins [BR:
iti03036
]
101959664 (Arid1a)
Transcription factors [BR:
iti03000
]
Eukaryotic type
Helix-turn-helix
ARID
101959664 (Arid1a)
Transcription machinery [BR:
iti03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101959664 (Arid1a)
Chromosome and associated proteins [BR:
iti03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
101959664 (Arid1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
101959664
NCBI-ProteinID:
XP_040145098
LinkDB
All DBs
Position
Unknown
AA seq
1530 aa
AA seq
DB search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NT seq
4593 nt
NT seq
+upstream
nt +downstream
nt
atggatcagatgggcaagatgagacctcagccatatggcgggactaacccatactcgcaa
caacagggacctccttcaggaccacagcaaggacatgggtacccagggcagccatatggg
tcccagactccgcagcggtacccgatgaccatgcagggccgggcgcagagtgccatgggc
agcctctcttatgcacagcaggtagatggtgactctgattactttgactcttgttgctat
tcaggatctactcctctgagctgtagaataaaaatatatccttactcgacgctctcccag
caggctgcatatcctcagccccagtctcagcagtcccagcaaactgcctactcccagcag
cgcttccctccaccacaggagctttctcaagattcttttgggtctcaggcatcctcagcc
ccctcaatgacctccagtaagggagggcaagaagatatgaacctgagtcttcagtcaaga
ccctccagcttgcctgatctgtctggttcaatagatgatctccccatggggacagaagga
gctctgagtcctggagtgagcacatcagggatttccagcagccaaggagagcagagtaat
ccagctcagtctcctttctctcctcatacctcccctcacctacctggcatccgaggcccc
tccccgtcccctgttggctctcctgccagtgttgctcagtctcgctcaggaccactctcg
cctgctgcagtgccaggcaaccagatgccacctcggccacccagtggccagtcagacagc
atcatacatccttccatgaaccaatcaagcattgcccaagatcgaggttatatgcagagg
aacccccagatgccccagtacagttccccgcagcccggctcggccttatctccgcgtcag
ccttctggaggacagatgcacacaggcatgggttcctatcagcaaaattccatggggagc
tatggtccccaagggggtcagtatggcccacaaggaggctaccccaggcagccaaactac
aatgccttgcccaatgccaactatcccagtgcaggcatggctggaagcatgaaccccatg
ggtgctggaggtcagatgcatgggcaaccaggcatcccaccttatggcacacttcctcca
gggagaatgagtcatgcctccatgggaaacaggccttatggcccaaatatggccaatatg
ccacctcaggttgggtcagggatgtgtcccccaccagggggcatgaaccggaaaactcaa
gaatctgctgtcccctatggacaaggaattaatagtatggctggcatgatcaaccctcag
ggacccccatatcccatgggtggaaccatggccaacaattcagcagggatggcagccagc
ccagagatgatgggtcttggggacgtcaagttaactccagctaccaaaatgaacaataag
gcagatgggacacccaagacagaatctaaatccaagaagtccagttcttctactacaact
aatgagaagatcaccaagttgtatgagcttggtggtgagcctgagaggaaaatgtgggtg
gaccgttatctggccttcacagaggagaaggccatgggtatgacaaatctgccagcagtg
ggtaggaaacctctggacctctatcgcctctatgtgtctgtgaaggagattggtggattg
actcaggtcaacaagaacaaaaaatggcgggaacttgcaaccaacctcaatgtgggcaca
tcaagcagtgctgccagctccttgaaaaagcagtatatccaatgtctctatgcctttgaa
tgcaagattgagcggggagaagatcctcccccagacatctttgcagctgctgattccaag
aagtcccagcccaagattcaacccccctctcctgcgggatcagggtctatgcaggggcca
cagactcctcagtcaaccagcagttccatggcagaaggaggagacctgaagccaccaact
ccagcatccacaccacacagtcagatcccccccttgccaggcatgaggagcaattcagtc
gggatccaggatgcctttcctgatggaagtgaccccacattccagaaacggaattccatg
actccaaaccctgggtatcagcccagtatgaatacctctgacatgatggggcgcatgtcc
tatgagccaaataaggatccttatggcagcatgaggaaagctccagggagtgatcccttc
atgtcctcagggcagggccccaatggcggtatgggtgacccctacagccgagctgcaggc
cctgggctcggaaatgtggctatgggaccacggcagcattacccctatggaggtccttat
gacagagtgaggacggagcctggaatagggcctgagggaaatatgggcactggggccccc
cagcccaatctcatgccttctaccccagactcggggatgtattctcctagccgctacccc
ccgcagcagcagcagcagcagcagcagcaacgacatgattcctatggcaatcagttctcc
acccaaggcaccccttccggtagcccctttcccagccagcagaccacaatgtatcagcag
caacagcagaattataagcggccaatggatggcacatacggccctcctgccaaacggcat
gaaggagagatgtacagcgtgccatacagcactgggcaggggcagcctcaacagcagcag
ttgccccccgcccagtctcagtctgccacccagcaacaagctgcccagccttcccctcag
caagatgtgtacaaccagtacggcaatgcctatcctgctactgccactgctgctactgag
cgccgaccagcaggcggcccccagaaccaatttccattccagtttggccgagaccgagtc
tctgcaccccctggctccaatgcccagcagaacatgccaccgcaaatgatgggcggcccc
atacaggcatcagctgaagttgctcagcaaggcaccatgtggcaggggcgtaatgacatg
acctataattatgccaacaggcagagcacaggctctgccccccagggtcctgcttatcat
ggtgtgaaccgaacagatgaaatgctgcacacggatcagagggccaaccacgaaggccct
tggccttcccatggcacacgccagcctccatatggcccctctgcccctgtgcccaccatg
acaaggccccctccatccaactaccagcccccaccaagcatgcagaatcacattcctcag
gtatccagccccgctcccctgccccggccaatggagaaccgtacctctcctagcaagtct
ccattcctgcactctgggatgaaaatgcagaaggcaggccctccagtacctgcctcccac
atagcacctgctcctgtgcagccccccatgattcggcgcgatatcaccttcccacctggc
tctgttgaagctacacagcctgtgttgaagcagagaaggcggctcacaatgaaannnnnn
ggaaccccggaggcatggcgggtaatgatgtccctcaagtctgggcttctggcagagagc
acgtgggcattagacaccattaacatcctgctatatgatgacaacagcattatgaccttc
aacctcagtcaggtgagtacagattctggggtagattgcaagggcctggaatcttctgat
tcccttgccaagcgctgtgtctgtgtctccaataccatccgaagcctgtcatttgtgcca
ggcaatgattttgagatgtctaaacacccagggctgctgctcatcctaggcaagctgatc
ctgctgcaccacaagcacccagaacgaaagcaggcaccactaacttatgagaaggaggag
gaacaggaccaaggggtgagctgcaacaaagtggagtggtggtgggactgcttggagatg
ctccgggaaaacaccttggtcacgctcgccaacatctcggggcaattggacctctcccca
taccccgagagcatttgcctgcctgtcctggacggactcctacactgggcagtttgccct
tcagctgaagcccaggaccctttctccaccctgggccccaatgccgtcctctccccccag
agactggtcttggaaaccctcagcaaactcagcatccaggacaacaatgtggacctgatt
ctggccacaccccccttcagccgcctggagaagttgtatagcaccatggtgcgcttcctc
agtgaccgaaagaacccagtgtgccgggagatggccgtggtactgctggccaacctggcg
cagggggacagcctggcagcccgtgccattgcagtgcagaagggcagcatcggcaacctc
ctgggcttcctcgaggacagccttgctgccacgcaattccaacagagccaggccagcctc
ctgcacatgcagaacccaccctttgagccaactagtgtggacatgatgcggcgggctgct
cgcgcgctgcttgccctggccaaggtggacgagaaccactccgagttcactctgtatgag
tcgcggctgttggacatctcagtgtcaccattgatgaactcattggtttcacaagtcatt
tgtgatgtactgtttttgattggccagtcatga
DBGET
integrated database retrieval system
