Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101959991
Help
Entry
101959991 CDS
T10664
Symbol
Rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
iti03016
]
101959991 (Rtcb)
Enzymes [BR:
iti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
101959991 (Rtcb)
Transfer RNA biogenesis [BR:
iti03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
101959991 (Rtcb)
Prokaryotic type
tRNA splicing ligases
101959991 (Rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
101959991
NCBI-ProteinID:
XP_005322377
UniProt:
I3M372
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRTYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtacttacaacgatgagttacagttcctggaaaagatcaataaaaactgctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
gctctggagaaattaatgtttgaggaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcttgccagccatgaaacagattggcaacgtggcagccttgcctggaattgttcat
cgatctattgggcttcctgatgtccattcaggctatgggtttgctattgggaatatggct
gcctttgatatgaatgatcctgaagcggtggtatccccaggtggtgtcggatttgacatc
aactgtggtgtgcgcttgctgagaaccaatttggatgagagtgatgtccagcctgtgaaa
gagcaactcgcccaagctatgtttgaccacattcctgttggggtgggatcaaaaggtgtg
atcccaatgaatgccaaagacttggaggaggccttggagatgggcgtggactggtcccta
agggaaggctatgcctgggctgaagacaaggagcactgtgaggagtatggaaggatgctg
caagctgaccccaacaaggtctctgcaagggccaagaaaagaggccttcctcagttgggg
acccttggagcaggcaaccactatgcagaaatccaggttgtggatgaaattttcaatgag
tatgctgctaagaaaatgggcatcgaccataagggacaagtgtgtgtaatgatccacagt
ggaagcagaggcttgggccaccaagtagccacagatgcactggtagctatggaaaaggcc
atgaagagagacaagatcatagtcaatgaccgtcagttggcttgtgctcgaattgcttct
gcagagggtcaggactacctaaagggaatggcagcagctgggaactatgcctgggtcaac
cgctcgtctatgaccttcttaacgcgtcaggcttttgccaaggtcttcaacacaacccct
gacgacttggacctgcatgtgatctatgatgtttctcacaatattgccaaagtagagcag
catgtggtggatggaaaggaacggacactattggtgcacagaaagggatccacccgtgct
ttccctcctcaccaccccctcattgctgttgattaccaactcactggacagccagtactt
attggtggcaccatgggaacttgtagttatgttcttactggcactgaacagggcatgact
gagacctttggaacaacctgtcatggagcgggccgtgcattgtcccgagcaaaatctcgg
cgtaatttagatttccaggatgttttagacaaattggcagatatgggaattgcgatccgt
gttgcctcacccaaactggttatggaagaggctcctgagtcctataagaacgttacagat
gtggtaaatacctgccatgatgctggaatcagcaagaaggccattaaactgagaccaatt
gctgttatcaaagggtag
DBGET
integrated database retrieval system
