Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101960024
Help
Entry
101960024 CDS
T10664
Symbol
Chd3
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 3 isoform X10
KO
K11642
chromodomain-helicase-DNA-binding protein 3 [EC:5.6.2.-]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101960024 (Chd3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
iti03036
]
101960024 (Chd3)
Chromosome and associated proteins [BR:
iti03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
101960024 (Chd3)
Chromatin remodeling factors
NuRD complex
101960024 (Chd3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
PHD
DUF1087
Chromo
CHDNT
HDA2-3
PHD-1st_NSD
ResIII
HTH_Hrp3
PHDvar_NSD
DEAD
PHD_2
AAA_22
LPD11
Motif
Other DBs
NCBI-GeneID:
101960024
NCBI-ProteinID:
XP_021587048
LinkDB
All DBs
Position
Unknown
AA seq
1830 aa
AA seq
DB search
MRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAV
SSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKK
MAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSIHSASGRPDGPVRTKKLK
RGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDP
ELDRAPEGKWSCPHCEKEGVQWEAKEEDEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGEL
LCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQ
QADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMD
EPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYH
YLVKWRDLPYDQSTWEEDEMNIPEYEDHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGD
GPPNSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKT
IQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRE
NEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRL
KNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADIS
KEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALN
SRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKM
LRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQ
QFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRA
SVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEE
DSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIK
QEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSE
EEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWG
MPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQV
LTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATN
SPCTSKPATPAPSEKGDGIRTPLDKEEAGNQEEKPEKNSKIGEKMETETDAPSPAPSLGE
RLEPRKIPLEDEVPVPGEMEPEPGYRGDRDKSATESTPGERGEEKPLDGQEHRERPEGET
GDLGKREDIKGDRELRPGPHEPRSNGRREEKVEKPRFMFNIADGGFTELHTLWQNEERAA
ISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKN
KFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKES
LAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASK
GTEPHPTPAFPPGPYATPPGYGAAFNAAPVGALAAAGANYSQMPAGSFITAATNGPPVLV
KKEKEMVGALVSDGLDRKEPRAGEVICIDD
NT seq
5493 nt
NT seq
+upstream
nt +downstream
nt
atgaggcccctaattgctaagaagaatcctaagatcccaatgtctaagatgatgaccatc
cttggggccaagtggagagagttcagcgccaacaacccctttaaggggtcagcagctgct
gtggctgcggcagcagcagcagcagcagcagctgtggctgagcaggtgtcagctgctgtc
tcctcagccacccccatagcaccttctggaccccctgcccttccaccaccccctgctgct
gatatccagcccccacccatccgaagagccaaaaccaaagagggcaaaggtccaggccat
aagaggcggagtaagagcccccgagtgcctgatggacgtaagaagcttcggggaaagaag
atggcaccacttaaaatcaaactagggcttcttggtggcaagaggaaaaagggaggctcg
tatgtttttcagagtgatgagggccctgaaccagaggctgaggagtcagacctggacagt
ggcagtatccacagtgcttcaggccggcctgatggccctgtccgcaccaagaaactaaag
agaggccggccaggaaggaaaaagaagaaggtcctgggctgtcctgcagtggccggggag
gaggaggttgatggctacgagacggatcaccaggattactgtgaggtgtgccagcagggt
ggggaaattattctgtgcgacacctgccctcgtgcctaccacctcgtctgccttgatcct
gagcttgaccgggctcctgagggcaaatggagttgcccccactgtgagaaggagggggta
cagtgggaggccaaggaggaagatgaagaatatgaagaggagggagaggaggaaggggag
aaggaggaagaggatgatcacatggagtactgccgtgtgtgcaaggatggtggggagctc
ctgtgctgtgacgcttgcatatcctcctaccacatccactgcctgaaccctcccctgcct
gacatccccaatggtgaatggctgtgtccccgatgcacatgtccagtgctgaagggtcgt
gtgcagaagatcctgcattggcgatggggggagccacctgtggcagtgccagcccctcaa
caggcagatgggaatccagatgtaccacccccccgccctcttcaaggcagatctgagcga
gaattttttgtcaagtgggtaggactatcctactggcactgttcctgggccaaggagctt
cagctggaaatcttccacttggtaatgtaccgaaactaccaacggaagaacgacatggat
gagcctccgcccctggattatggctctggtgaggatgatgggaagagtgacaagcgcaag
gtgaaagatccacactatgcagagatggaggagaagtactatcgtttcggcatcaagcca
gagtggatgactgtccatcgaatcatcaaccacagtgtggataaaaaagggaattaccac
tatcttgtgaaatggagggacttgccctatgaccagtccacatgggaagaagacgaaatg
aacattcctgaatatgaagaccataagcaaagttactggagacatcgagaacttattatg
ggggaggaccctgcccaaccccgcaagtataagaagaagaagaaggaactgcagggtgac
gggcctcccaattctcctactaatgatcctacagtgaaatatgagactcagccacggttt
atcacagctactggaggaacactgcacatgtaccagctggaagggctgaattggctacgt
ttttcatgggcccagggcaccgacacaattctggctgatgagatggggctgggaaagacc
attcaaaccatcgtcttcctctactcactctataaggagggccacacaaaaggtcccttc
ctggtcagtgccccactttctaccatcattaactgggagcgggagttccagatgtgggca
cccaagttctacgtggtgacatacacgggtgacaaggacagccgggctatcattcgtgag
aatgagttctcttttgaggacaatgccatcaaaggcggcaagaaagcttttaagatgaag
agggaggcacaggtgaaattccacgttctcctgacatcatatgagctgatcaccattgat
caggcagctcttggctccatccgctgggcctgtcttgtggtggatgaagcccatcgactc
aagaacaaccagtccaagtttttcagggtcctcaatggctataagatagatcacaagttg
ctactgacaggaaccccactgcagaataatctggaggaactctttcatctgctaaacttc
ctcaccccagagaggtttaacaacttggaaggcttcctggaggagttcgctgacatatcc
aaagaggaccagattaagaaactgcatgatttgctgggacctcacatgttgcggaggctc
aaagcagatgtctttaagaacatgccagccaagacagaactcatcgttcgagtggagctg
agccccatgcagaagaaatactacaaatacatcctgactcgaaattttgaggccttgaat
tcacgaggcggtgggaaccaagtgtcactgcttaacatcatgatggatcttaagaagtgc
tgcaatcacccatacctctttcctgtggctgctatggagtccccaaaacttcccagtggg
gcttatgagggtggagcacttattaaatcatcagggaagctcatgttactgcagaagatg
ctgcggaagctgaaagaacaaggacacagagtgctcatcttctcgcagatgaccaaaatg
ttagacttgctagaagacttcttagactacgaaggctacaaatatgagcgcattgatggt
ggtatcactggtgccctgaggcaggaagccattgatcgattcaatgctcctggggcccaa
cagttctgcttcctcctgtctacccgagctgggggcctaggcatcaatctggcgactgct
gacactgttatcatctttgattctgactggaacccccacaatgacatccaggctttcagc
cgggctcaccggatcggccaggccaacaaagtgatgatttaccggtttgtgactcgcgca
tccgtggaagagcgaatcacacaggtagccaagagaaagatgatgctgacacacctggtg
gtgcggcccgggctgggctccaaggcagggtctatgtccaagcaggagcttgatgacatc
ctcaaatttggcactgaggagctattcaaagatgaaaatgaaggggagaacaaagaggag
gacagcagtgtgatccactatgacaatgaggccattgctcggctgttggacaggaaccag
gatgcaactgaggatactgatgtacagaacatgaatgagtatctcagttccttcaaggtg
gcacagtatgttgttcgggaagaagacaagattgaggagatcgagcgagagatcatcaaa
caggaggagaatgtagaccctgactactgggaaaagctgctgaggcatcactatgagcag
cagcaggaagacctcgcccggaacctaggcaagggcaaaagggttcgcaagcaagtcaac
tacaacgatgctgctcaggaggaccaagataaccaatcagaatactcagtagggtcagag
gaggaagatgaagactttgatgagcgtcctgaaggacgtcgacagtcaaaaaggcagctc
cgaaatgagaaggacaagcccctgcctccactgctggctcgagttgggggcaacattgag
gtgttgggattcaacacccgtcagcggaaggctttcctcaatgctgtgatgcgctgggga
atgccgccacaggatgccttcaccacacagtggctggtacgagacctgaggggcaagact
gagaaggagttcaaggcctatgtgtctttgttcatgcgccatttgtgtgagcctggtgca
gatggctctgaaacctttgctgatggagtccctcgggagggactgagtcgccagcaggtg
ttgacccgcattggagtcatgtctcttgtcaagaagaaggtacaggaatttgagcacatc
aatgggcgctggtcaatgccggagctgatgcctgatcccagcgctgactccaagcgctct
tctagagcttcctctcctaccaaaacatctcccaccactcctgaggcttctgctaccaat
agtccttgcacctctaaacctgctactcctgctccaagtgagaaaggagatggcataagg
acacctcttgataaggaagaagctggcaaccaggaggagaagccagagaagaatagcaaa
attggggagaagatggagacagagactgatgccccaagcccagccccatcacttggggag
cgactggagccaaggaagattcccctagaggatgaagtgccagtgcctggagagatggag
cctgaacctgggtaccgaggggacagagataagtcagccacagagtcgacgccaggagaa
aggggggaggagaagccgttggatggacaggaacacagggagaggccggagggggaaaca
ggggatttgggcaagagagaagatataaaaggggaccgggagcttcgacctgggcctcat
gagccaaggtccaacgggcgccgtgaggagaaggtggagaagccacggttcatgttcaat
attgctgacggtggtttcacagagcttcataccctgtggcagaatgaagaacgggcagct
atttcctctgggaaactcaatgagatctggcaccgaagacatgactactggcttctggct
gggattgtcctccacggctatgcacggtggcaggacatccagaatgatgctcaatttgcc
attattaatgaaccatttaaaactgaagccaataaggggaactttctggagatgaaaaat
aagttcctggcccggaggttcaagctcctggagcaggcgctggtgatcgaggagcagctg
cggcgggcggcctacctgaacctgtcacaggagccggcgcaccccgccatggccctccac
gcccgctttgccgaggccgagtgcctagccgagagccaccagcacctctccaaggagtcg
ctggcggggaacaagccggccaacgccgtcctgcacaaggttctgaaccagctggaggag
ttgctgagcgacatgaaggcggatgtgacccgcctgccagccacgctgtcccgaataccc
cccatcgcagcccgccttcagatgtccgagcgcagcatcctcagccggctggccagcaag
ggcacggagcctcaccccacaccggccttccccccgggtccctacgccacacctccgggg
tacggggcggccttcaacgccgcacccgtaggggccctggctgccgcaggcgccaattac
agccagatgcctgcagggtccttcatcacagccgccaccaacggccctccagtgctggtg
aagaaggagaaggaaatggtgggggcactggtgtcagacgggctggatcggaaggagccc
agagccggggaggtgatctgtatagacgactga
DBGET
integrated database retrieval system
