Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101960044
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Entry
101960044 CDS
T10664
Symbol
Myo5c
Name
(RefSeq) unconventional myosin-Vc isoform X2
KO
K10357
myosin V
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
101960044 (Myo5c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iti03019
]
101960044 (Myo5c)
04131 Membrane trafficking [BR:
iti04131
]
101960044 (Myo5c)
03029 Mitochondrial biogenesis [BR:
iti03029
]
101960044 (Myo5c)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
iti04812
]
101960044 (Myo5c)
Messenger RNA biogenesis [BR:
iti03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
101960044 (Myo5c)
mRNA cycle factors
P-body specific factors
101960044 (Myo5c)
Membrane trafficking [BR:
iti04131
]
Others
Actin-binding proteins
Myosins
101960044 (Myo5c)
Mitochondrial biogenesis [BR:
iti03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
101960044 (Myo5c)
Cytoskeleton proteins [BR:
iti04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
101960044 (Myo5c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
WIV_dom_3
AAA_16
AAA_22
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
101960044
NCBI-ProteinID:
XP_005316641
UniProt:
I3MM75
LinkDB
All DBs
Position
Unknown
AA seq
1742 aa
AA seq
DB search
MAVAELYTQYNRVWIPDPEEVWKSAEIAKDYRIGDKVLQLLLEDGTELDYPIDPGSLPPL
RNPDILVGENDLTALSYLHEPAVLHNLRIRFAESKLIYTYSGIILVAMNPYKQLPIYGDA
IIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSGESGAGKTVSARYAMRYFAT
VSKSSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRTY
LLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGSTVIEGVNDR
ADMVETQKTFKLLGFKEDFQMDVFKILAAILHLGNVQIAAVGNERSFISEDDSHLKVFCE
LLGLENSKVAQWLCNRKIVTTSETVVKPMTRPQAINARDALAKKIYAHLFDFIVERINQA
LQFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKEDI
PWTLIDFYDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPR
MSSASFIIQHFADKVEYKCEGFLEKNRDTVYDMLVETLRASKFHLCANFFQENPIPSSPF
GSMITVKSAKQVIKPNSKHFRTTVGSKFRSSLYLLMETLNATTPHYVRCIKPNDEKLPFE
FDSKRIVQQLRACGVLETIRISAQSYPSRWTYIEFYSRYGILMTPQELAVSDKKQVCKVV
LHRLIQDSNQYQFGKTKIFFRAGQVAYLEKLRLDKLRQGCIVIQKHVRGWLQRKKFLRER
QAALTIQQYFRGQQTVRKAITALALKEAWAAIIIQKHCRGYLVRNLYQLIRVATITIQAY
TRGFLARRRYRKMLEEHKAVILQKYARAWLARRRFQNIRRFVLNIQLTYRVQRLQKKLED
QNKENHGLVEKLTSLAALRAGDIEKIQKLETELERAATHRQNYEEKGKRYKDTVEEKLAK
LQKHNSELEIQKEQIQLKLQEKTEELKEKMDNLTKQLFDDVQKEERQRILLEKSFELKTQ
DYEKQIQSLKEEIKALKDEKTQLHHRLEEERVTSDGLKGEVARLSKQAKTISEFEREIEL
LQTQKIDVEKHVQSQKREMREKMSEITKQLLESYDIEDVRSRLSVEDLEHLNEDGELWFA
YEGLKKATRVLENHFQSQKDCYEKEIEALNFKVVHLSQEINHLQKLFREENDINESIRHE
VARLTSENMMIPDFKQQISELEKQKQDLEIRLNEQTEKMKGKLEELSNQLHRRLEEEGTQ
RKAAEAQNEIHTKAKEKLMDKIQELQEASEHLKKQCETESEVGSDFRQEASRLSLENKDL
EEELDMKDRMIKKLQDQVKTLTKTIEKANDVHLSSGPKDYLGMLEYKREDEAKLIQNLIL
DLKPRGVVVNMIPGLPAHILFMCVRYADSLNDANMLKSLMNSTINGIKQVVKDHLEDFEM
LSFWLSNTCHFLNCLKQYSGEEEFMKHNSPHQNKNCLNNFDLSEYRQILSDVAIRIYHQF
IIIMENNIQPIIVPGMLEYESLQGISGLKPTGFRKRSSSIDDTDAYTMTSILQQLSYFYT
TMCQNGLDPELVRQAVKQLFFLIGAVTLNSLFLRKDMCSCRKGMQIRCNISYLEEWLKDK
NLQNSLAKETLEPLSQAAWLLQVKKTTDSDAKEIYERCTSLSAVQIIKILNSYTPIDDFE
KRVTPSFVRKVQALLNSREDSSQLMLDTKYLFQVTFPFTASPHALEMIQIPSSFKLGFLN
RL
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggccgagctgtacacgcagtacaacagggtttggattcctgatcctgaagaa
gtttggaagtctgctgaaatagcaaaggactacagaattggtgacaaagtcctgcaactc
ctgctagaagatggaacggagctggattatcccattgacccaggatcactgcctcctctc
aggaatcctgacatccttgtgggcgagaatgacctcaccgccctcagctatctccacgag
cctgcagtgctccacaatctcagaatccgctttgcagagtccaaactcatttacacctac
agcggaatcattttggtggccatgaatccctacaagcagctgcccatatatggggatgcc
atcatccatgcctacagcgggcagaacatgggcgacatggacccacacatatttgccgtg
gcagaagaggcctacaagcagatggccagaaacaatagaaatcagtcaataattgtgagc
ggggagtcgggagctggaaagacggtgtctgctcgctacgccatgaggtacttcgccact
gtcagcaagtccagcagcaatgctcacgtggaggacaaggttctggcatccaatcccatc
accgaggctgttggaaatgccaagaccacacgcaatgacaacagcagtcgtttcgggaag
tacacagaaatcagctttgatgagagaaatcagattataggagccaacatgagaacctac
ctcctggagaaatccagagttgtctttcaatcagaaaatgaacggaattaccacattttc
tatcagctttgcgcgtctgcacaacagtcggaatttaaacatcttaaactggggagtgca
gaagaatttaattatacaagaatgggaggcagtactgtcatcgagggtgtgaatgaccga
gctgacatggtagagactcagaagaccttcaagctactgggtttcaaggaggattttcag
atggatgtttttaagatcctggcagccatcctgcacctgggcaacgtgcagatcgcagca
gtgggcaacgagagatccttcattagtgaggatgacagtcacctgaaggtgttctgcgag
ctcctgggtctggagaatagcaaagtcgctcagtggctatgcaaccgtaaaattgtcaca
acctctgagacagtggtgaaacccatgaccaggccccaggccatcaacgccagggatgcg
ctggccaaaaagatctatgctcacctgtttgacttcattgtggagagaattaaccaagca
ttgcagttttcaggcaagcagcacacttttattggtgttttggacatttatggttttgaa
acctttgatgtgaacagctttgaacaattctgcatcaattatgctaatgaaaagctgcaa
caacagttcaatctgcatgtctttaaacttgaacaagaagaatatatgaaggaagacatc
ccttggactctgatagatttttatgacaaccagccagttattgacctaattgaagcaaag
atgggcattttggaattactggatgaagaatgtttgttaccacatggaactgatgaaaat
tggcttcaaaagctgtataataattttgtcaacaagaactccttatttgaaaaacccaga
atgtcaagcgcatcctttatcatccagcactttgccgataaggtagagtataaatgtgaa
ggtttcctcgagaagaacagagacactgtctatgacatgctggttgaaaccctgagagca
agcaagtttcatctctgtgccaacttttttcaagaaaatcccattccttcttcccctttc
ggctcaatgatcacagttaaatctgctaagcaagtcatcaaaccaaacagcaagcacttc
cggaccacagttgggagcaagttccgcagttctctgtacttgctcatggagaccctcaat
gccacaacacctcactatgttcgatgcatcaagccaaatgatgagaaattaccctttgag
tttgactccaaaagaatcgtgcagcagctgcgagcctgtggtgtcttggagacaattcgc
atcagtgcgcagagctatccttccaggtggacgtacatcgagttctacagtcgctacggc
atcctcatgaccccgcaggagctcgccgtcagtgataagaagcaggtgtgcaaagtggtt
ttgcacaggctcatccaggattctaatcagtaccagtttggtaaaaccaaaattttcttc
agagcgggtcaagtggcttacttagagaaactccgattggataaactgaggcagggttgt
attgtgatacaaaagcatgtccgtggctggcttcagaggaaaaaattcctccgagagagg
caagctgccctgaccatccagcagtacttccggggccagcaaaccgtgaggaaagctatc
actgccttggccttgaaagaagcctgggcagccatcatcattcagaagcactgccgtgga
tacctggtccgcaatctataccagctgatccgcgtggccaccatcaccatccaggcctac
acccgaggattcctggccaggaggaggtatcgaaagatgctggaggaacacaaggccgtg
atccttcagaaatatgcccgggcatggctggccaggcgcagattccagaatatccgacga
tttgtgctcaacattcagctgacttaccgggtccagcgtttgcagaaaaagctagaggat
cagaacaaagagaaccacgggctggtggagaagctgaccagtctggctgctctccgggcc
ggtgacatagagaagattcagaagctggaaacagagctggaaagagcggccacccacagg
cagaattacgaggagaagggcaagagatacaaggatacagtggaagagaaattggcaaag
cttcagaagcataattcagaactggaaatacagaaagagcaaatacagttgaagcttcaa
gagaagactgaagagttgaaagaaaaaatggacaacctcaccaagcagctctttgatgat
gtacaaaaagaagaacgacaaagaatacttcttgaaaaaagttttgagttgaaaacacaa
gactatgagaagcagattcaatctctgaaagaagaaattaaagctctcaaggatgagaaa
acacagctccaccatcggctggaggaggagcgtgtcacctcagatggcctcaagggggaa
gtggctcggctgagcaagcaggctaagaccatctctgagtttgagagggagatcgagctg
cttcagacccagaagatagacgtggaaaaacacgtgcagtcacagaaacgagaaatgaga
gaaaagatgtcagagatcacgaaacaacttctcgagagctatgacattgaagatgtaaga
agcaggctttctgtggaagatttggaacatttaaatgaggatggagaactttggtttgct
tatgaaggactaaagaaagcaacacgtgttttggagaaccatttccagtctcagaaagat
tgctatgaaaaggaaattgaagctctgaacttcaaagtggtgcatctaagtcaagaaatc
aaccacctccagaaattgtttagagaagagaatgatatcaacgaaagtatccgtcatgaa
gttgccaggctgacatcagaaaacatgatgatcccagattttaaacagcaaatttcagag
ctggagaaacaaaagcaagatcttgaaattcgtctgaatgaacaaactgagaaaatgaaa
ggaaaactggaagaattgtctaatcagttacatcgccgtctagaagaggaaggaacacaa
agaaaggcagcagaagcccagaatgaaatacacaccaaagcgaaagagaagctgatggat
aagatccaagagctgcaggaggccagcgagcacctgaagaagcaatgtgagactgaaagt
gaagttgggagtgattttcggcaggaagcttctcgtctctctttggaaaacaaggacctt
gaagaagagttagacatgaaggacagaatgattaaaaagctacaagatcaagtcaagact
ctaaccaagacgattgaaaaagccaatgatgtacacttgtcctcgggacccaaggattat
cttggaatgctggaatacaagagagaagacgaggccaagctcattcaaaacctcattctt
gatctgaagccccgtggtgtggttgtgaacatgatccctggactgccagctcacatcctg
ttcatgtgtgtacgctatgcagactctttaaatgatgccaacatgctgaagtccctcatg
aacagcaccattaatggcatcaagcaggtggttaaggaccatttagaagactttgagatg
ctgtccttttggctttctaatacgtgtcacttcctcaactgcctgaagcagtacagtgga
gaagaggaatttatgaagcataacagtccacatcagaataagaattgcttgaacaatttt
gacctttcagaatacagacagattcttagtgatgtggccatacgaatatatcatcagttc
attatcataatggaaaataacatccaaccaataatagtgcctggcatgctggagtatgag
agtctgcagggcatctccggcctgaagcccacgggcttccggaagcggtcatccagcatt
gacgacacggacgcctacacgatgacctccatcctgcagcagctgagctatttctacacc
accatgtgccagaatggcctggacccagagctcgtgaggcaggcagtgaagcagctgttc
ttcttgattggggcagtcaccctgaatagcctcttcctgcgcaaggacatgtgctcctgc
aggaaagggatgcagataaggtgcaacatcagctacttagaagaatggcttaaagataag
aatttgcagaacagcttagccaaggaaactttggagcccctctctcaggcagcctggttg
ctccaggtcaagaagaccacagacagcgatgccaaggagatctacgaacgctgcacctca
ttgtcagcggtgcagatcataaagatccttaattcatacacacctatagatgacttcgag
aaaagagtgactccatcctttgttcgaaaagtacaggcacttctgaatagccgggaggat
tcatcacagctgatgttagataccaaatacctctttcaagtcacatttccttttactgcc
tctccacatgctctggaaatgattcagatccccagcagtttcaagctaggctttctcaat
agattatag
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integrated database retrieval system
