Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101960162
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Entry
101960162 CDS
T10664
Symbol
Rapgef1
Name
(RefSeq) rap guanine nucleotide exchange factor 1 isoform X4
KO
K06277
Rap guanine nucleotide exchange factor 1
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04015
Rap1 signaling pathway
iti04510
Focal adhesion
iti04722
Neurotrophin signaling pathway
iti04910
Insulin signaling pathway
iti05211
Renal cell carcinoma
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09132 Signal transduction
04015 Rap1 signaling pathway
101960162 (Rapgef1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101960162 (Rapgef1)
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
101960162 (Rapgef1)
09156 Nervous system
04722 Neurotrophin signaling pathway
101960162 (Rapgef1)
09160 Human Diseases
09162 Cancer: specific types
05211 Renal cell carcinoma
101960162 (Rapgef1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGEF
RasGEF_N
Motif
Other DBs
NCBI-GeneID:
101960162
NCBI-ProteinID:
XP_005321156
UniProt:
A0A287CZ55
LinkDB
All DBs
Position
Unknown
AA seq
1224 aa
AA seq
DB search
MGNAVEKQKPLRRSQLCPWKQDSQRSHLSSFTMKLMDKFHSPKIKRTPSKKGKPAEVSVK
IPEKPVNKNLSWLEEKEKEVVSALRYFKTIVDKMAVDKKVLEMLPGSASKVLEAVLPLVQ
TDPRIQHSSALSSCYSRVYQSLANLIRWSDQVMLEGVNSEDKEMVTTVKGVIKAVLDGVK
ELVRLTIEKQGRPSPTSPVKPSSPAGKPDGQPELPLTDREMEILNKATGVSPSTELLPDS
TDEEVAPPKPPLPGIRVVDNSPPALPPKKRQSAPSPTRVAVVAPMSRATSGSSLPVGINR
QDFEVDCYAQRRLSGGSHSYGGESPRLSPCSSIGKLSKSDEQLSSLDRDSGQCSRNTSCE
TLDHYDPDYEFLQQDLSNADQIPQHVACNLSPLPESLGETGSPFPSHPFQLPLGSCPPSE
GPSALGRQTDTPPALPEKKRRSAASQASDSAGCRASYERHPSQYDNIPEDDLQNPAPALP
YTPFAAVLPFQQGGSSTPIEFVGDFTAPESAGDPEQPPPLPEKKNKHMLAYMQLLEDYSE
PQPSMFYQTPQNEHIYQQKNKLLMEVYGFNDSFSGGDSLQELAPPPALPPKQRQLQASYA
ASSFSSVSYCVQQTKVAFTPEDGSATQGLSVSVSNSFLSRHGSLPVPSYKSVFRSYSQDF
VPHHQASVQPFLPPTSSSSPHFPPVHPSQSSDLAVPAVAGPPPSTMAGPLSSSQESSFHG
NTVCLPSETSCADSSENASEEAGEGEYVSLYSSGQSSEELAPSRGESPAGKDGHSRDPSA
VGSAPGKDSRDGGERSPKSPDTLESAQSEEEVDELSLIDHNEIMARLTLKQEGDDGPDVR
GGSGDILLVHATETDRKDLVLYCEAFLTTYRTFISPEELIKKLQYRYEKFSPFADTFKKR
VSKNTFFVLVRVVDELCLVELTEEILKLLMELVFRLVCNGELSLARVLRKNILDKVDQKR
LLRCANSDQPLAARGVAARPGTLHDFHSHEIAEQLTLLDAELFYKIEIPEVLLWAKEQNE
EKSPNLTQFTEHFNNMSYWVRSIIMLQEKAQDRERLLLKFIKIMKHLRKLNNFNSYLAIL
SALDSAPIRRLEWQKQTSEGLAEYCTLIDSSSSFRAYRAALSEVEPPCIPYLGLILQDLT
FVHLGNPDYIDGKVNFSKRWQQFNILDSMRCFQQAHYDIRRNDDIINFFNDFSDHLAEEA
LWELSLKIKPRNITRRKTDREEKT
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgggcaatgctgtagaaaaacagaagcccttgagacgaagccaactgtgcccctggaaa
caagactctcagcgctctcatctctcctccttcaccatgaagctgatggacaaattccac
tcgcccaaaatcaagagaacaccatcaaagaagggaaagcctgccgaggtgtctgtgaag
attccagagaagcctgtgaacaaaaacctgagctggctggaggagaaggagaaggaagtc
gtcagtgccttgcgctactttaagaccattgtggacaaaatggctgtggacaagaaggtg
ctggagatgctcccgggctctgccagcaaggtgctggaggccgtcttacctctggtgcag
actgaccctcgtatccagcacagctcagccctctcctcctgctacagccgagtgtaccaa
agtcttgccaacctcatccgttggtctgaccaggtgatgctggaaggcgtgaactcagaa
gacaaggagatggtgacaactgtgaaaggagtcatcaaagctgttctggatggagtaaag
gagctggtcaggctgaccatcgagaagcaggggcggccatctccaacaagcccagtaaag
cccagttccccagccggcaagcctgacggccagcctgagctccccctgacagaccgagag
atggagattctaaacaaggcgacaggtgtgtctccgtcaactgagcttctcccagactcc
acagatgaagaggttgcgccccccaagcctcctttacctggcattagggtggttgataac
agtccaccagcattgccacccaagaaaagacagtcggcaccgtcccctacccgggtggct
gtggtagcccctatgagtcgggccaccagtggctccagtttgcctgttggaattaatagg
caggattttgaggttgactgttatgcacagaggcgactgtcagggggcagccactcatat
ggcggagagtctccccgcctctccccctgcagcagcataggcaagctcagcaagtcggat
gagcagctctcttctctggacagggacagtggacagtgctcccggaacacaagctgtgaa
acactagatcactatgatcccgactatgaattcctccagcaagacctctccaacgcagac
cagatacctcagcacgtggcctgcaaccttagcccgctgccggagtccttgggggagact
gggtctccgtttcccagccatcctttccagctgcctcttggaagctgtcccccgtctgag
ggaccctctgccctggggcggcagacagacacaccacctgctttgcctgagaagaagcgt
cggagcgcagcttcccaggcctcggacagtgctggctgcagggcatcctatgagcggcac
ccctcgcagtacgacaacatccccgaggacgacctacagaacccagccccagctctcccc
tatacgcccttcgctgctgtcctcccctttcagcaaggaggctcctcaacccccatcgag
tttgtgggtgattttactgctcccgagtcagcgggggatccagagcagccacctcctcta
ccagagaagaaaaacaaacacatgctggcctacatgcagttgctggaggactactcggag
ccgcagccctccatgttctaccagacgccacagaacgagcacatttaccagcagaagaac
aagctactcatggaagtgtacggtttcaacgactccttcagtggcggggattctctgcag
gaactggccccaccgcccgccctgccccccaaacagcggcagctgcaggcctcctatgct
gcttcttccttctcctctgtctcctactgtgtgcagcaaactaaagtggccttcaccccc
gaggacggcagtgccactcagggcctcagtgtgtccgtgtctaactcctttctcagccgg
cacggcagcttgcctgtgccctcgtacaaatctgtgtttaggtcctactcccaggacttc
gtgcctcaccaccaggcttccgtccaacctttccttccgcctacctcctcttcctctccg
catttcccacctgtccacccgtctcagagctcggacttggcggtgcctgccgtagccggt
ccgcctcccagcaccatggccgggcctctctcatcctctcaggagagcagctttcatggg
aacactgtctgccttccttccgaaacctcttgcgctgactcgagcgaaaacgccagtgag
gaagctggtgagggtgaatatgtcagtctgtattcctctggccagagcagcgaggagctg
gctccctctcgaggagaatcgccagctgggaaagacggacattccagagatccctcagct
gttggcagtgcccctgggaaggacagcagagatggtggtgagaggtccccaaagtcacct
gacactctggagtcagctcagtcggaggaggaagtagatgagctgtcccttattgaccac
aacgaaattatggccaggctgacactcaagcaagagggagatgatgggccagatgtacgt
ggaggatctggagacatcttactggttcatgctactgagacggacaggaaagatctggtg
ctgtactgcgaagccttcctgaccacctacaggacctttatcagccccgaggagctcatc
aagaaactgcagtaccgctatgagaaattctctcccttcgccgacacattcaagaagcgc
gtcagcaagaacacgttcttcgtgctggtgcgggtggtggatgagctctgcctggtggag
ctgacagaggagatcctgaagctgctgatggagctggtcttccgcctggtgtgcaatggg
gagctcagcctggctcgcgtgctccggaagaacatcctagacaaggtggaccagaagaga
ctgctcaggtgtgccaactccgaccagcccctggcagcccggggtgttgcagccaggcca
gggaccttgcatgactttcacagtcatgaaatagccgagcagctgacactgttggatgct
gagctcttctataaaatagagattcctgaggttttactttgggcaaaagaacagaatgag
gagaagagccctaacctgacccagttcacagagcacttcaacaacatgtcctactgggtc
cggtccataatcatgttacaggaaaaagcccaggacagggagcggctgctcttaaagttc
atcaagatcatgaagcacctgcggaagctaaataacttcaactcctacctggccatcctc
tcagcgctggattcagcgcccatccgtcggctggagtggcagaagcagacctcagagggc
ctggccgagtactgcactctgattgacagttcgtcctccttccgagcctaccgggccgcc
ctctcagaggtggagcccccctgcatcccatacctgggtctgatcctgcaggacctgacc
tttgtccacctggggaacccggactacatcgatggcaaagtgaacttttccaaacggtgg
cagcagttcaacatcctcgacagcatgcggtgcttccagcaggcgcattacgacatccgg
agaaatgatgacattataaacttcttcaatgacttcagtgaccacttggccgaggaggcc
ctatgggaactctctttgaaaattaagcccaggaacataacaaggaggaaaacagatcgg
gaagagaagacctag
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