KEGG   Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101960192
Entry
101960192         CDS       T10664                                 
Symbol
Smu1
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
iti  Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Brite
KEGG Orthology (KO) [BR:iti00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:iti03041]
    101960192 (Smu1)
Spliceosome [BR:iti03041]
 Complex B
  Other components
   Complex B specific factors
    101960192 (Smu1)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_EML WD40_Gbeta Beta-prop_WDR90_POC16_2nd LisH_TPL WDR90_beta-prop_4th Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_ACSF4 Beta-prop_VPS8 Beta-prop_Vps41 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Ge1_WD40 Beta-prop_Nup120_160 Beta-prop_NWD2_C Beta-prop_Aladin Beta-prop_HPS5 Beta-prop_WDR41 Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_WDR75_2nd WD40_RFWD3 Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_BBS7 Beta-prop_IP5PC_F Beta-prop_DCAF12 Beta-prop_RSE1_2nd TFIIIC_delta DUF7165 VPS8_N KNTC1_N PROPPIN Beta-prop_NOL10_N LisH LisH_PAC1
Other DBs
NCBI-GeneID: 101960192
NCBI-ProteinID: XP_005326241
UniProt: A0A287DC85
LinkDB
Position
Unknown
AA seq 513 aa
MSIEIESSDVIRLIMQYLKENSLHRALATLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTQD
GHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtcgatcgaaatcgagtcttcggatgtgatccgtctgatcatgcagtacctgaaggag
aacagtttacatcgggcgttggccaccttacaggaggagactactgtgtctctgaatact
gtggacagcattgagagttttgtcgctgacattaacagtggtcattgggatactgttcta
caggctatacagtccttgaagttgccagacaaaacccttattgacctttatgaacaggtt
gttctggaattgatagagctccgtgaattgggtgctgctaggtcacttctgagacagact
gaccccatgatcatgttaaaacaaacacagccagagcggtatattcatctggagaacctc
ttggcaaggtcttattttgatcctcgtgaggcatatccagatggaagtagcaaagagaag
agaagagcagcaattgcccaggccttagctggggaagttagtgtggtgcctccatctcgt
ctcatggcattgctgggacaggcactaaagtggcagcagcaccaggggttgcttcctcct
ggtatgaccatagatttgtttcgtggcaaagcagctgtcaaagatgtggaagaggaaaag
tttcctacacagctgagcaggcatattaagtttggtcagaaatcacatgtggagtgtgct
cgattttctccagatggtcagtatctggtcactgggtctgttgatggattcattgaagta
tggaactttactaccggaaaaatcaggaaggatcttaagtaccaggcccaagataatttc
atgatgatggatgatgctgttctctgcatgtgtttcagtagagatacagaaatgttagca
accggagcccaagatggaaaaatcaaggtctggaagattcagagtggacagtgtttaagg
agatttgaaagggcacacagtaaaggagttacttgtctgagtttttctaaggatagcagt
caaatccttagtgcctcttttgaccagacaattagaattcatggtttaaagtctgggaaa
accctgaaggaatttcgtggccattcctcctttgttaatgaagcaacatttacacaagat
ggacattatattattagtgcatcctctgatggcactgtaaagatctggaatatgaaaact
acagaatgttcaaatacctttaaatccttgggaagcactgcagggacagacattactgtc
aacagtgtgatcctgcttcctaaaaatccagagcattttgtggtatgcaacagatcaaac
acagtggtcatcatgaacatgcaagggcagattgtcagaagcttcagctctggtaaaaga
gaaggtggtgactttgtttgctgtgccctctctccccgtggtgaatggatctactgtgtg
ggggaggactttgtgctgtactgttttagcacagtgactggcaaactggagagaaccttg
acagttcatgagaaggatgtgattggtattgcacatcaccctcatcagaacctgattgct
acctatagtgaagatggactcctaaagctctggaaaccctaa

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