Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101960280
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Entry
101960280 CDS
T10664
Symbol
Col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04151
PI3K-Akt signaling pathway
iti04382
Cornified envelope formation
iti04510
Focal adhesion
iti04512
ECM-receptor interaction
iti04820
Cytoskeleton in muscle cells
iti04926
Relaxin signaling pathway
iti04933
AGE-RAGE signaling pathway in diabetic complications
iti04974
Protein digestion and absorption
iti05146
Amoebiasis
iti05165
Human papillomavirus infection
iti05200
Pathways in cancer
iti05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101960280 (Col4a6)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101960280 (Col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101960280 (Col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101960280 (Col4a6)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
101960280 (Col4a6)
09154 Digestive system
04974 Protein digestion and absorption
101960280 (Col4a6)
09158 Development and regeneration
04382 Cornified envelope formation
101960280 (Col4a6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
101960280 (Col4a6)
09162 Cancer: specific types
05222 Small cell lung cancer
101960280 (Col4a6)
09172 Infectious disease: viral
05165 Human papillomavirus infection
101960280 (Col4a6)
09174 Infectious disease: parasitic
05146 Amoebiasis
101960280 (Col4a6)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
101960280 (Col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
iti04147
]
101960280 (Col4a6)
00536 Glycosaminoglycan binding proteins [BR:
iti00536
]
101960280 (Col4a6)
Exosome [BR:
iti04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101960280 (Col4a6)
Glycosaminoglycan binding proteins [BR:
iti00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101960280 (Col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101960280
NCBI-ProteinID:
XP_040140030
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Position
X
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AA seq
1680 aa
AA seq
DB search
MCMCVCVCVCVCVCVCVLCFPCKYLLSGTAIWILGSAKDEFGQGRPGPIGFQGPTGPEGF
AGPTGLSGLKGEKGSPGPLGPYGPKGDKGPMGVPGFLGINGIPGHPGQPGPRGPPGLDGC
NGTRGAVGFPGPDGYPGILGPPGLPGQKGSKGEPIPSPGSFAGMKGDPGLPGLDGIPGPR
GPPGSPGDSGSKGPPGLQGPPGPPGFPGPDGNMGLGFQGEKGVKGDVGLPGPAGPPPSTG
ELEFMGFPKGKKGSKGEPGPPGFPGMSGPPGFPELGSIGEKGEKGIPGLPGPRGPIGLEG
VPGPPGTQGMMGPPGFPGLNGFPGVKGEKGGIGLPGPDIDEGGAVISGYPGDPGIPGLPG
LKGDEGIQGQRGPSGPPGLPALTGIPGALGPQGFPGLKGDQGNPGPTTVGLPGRIGFPGL
PGPPGPPGPPGSPFKTGTLYGLEPGFPGLRGERGPKGSPGFKGVKGDSGFCACDGGVPNT
GPPGEPGLPGPQGLMGLPGLKGTRGDPGSVGTQGPAGAPGLFGPPGLVGPKGKKGEPTLS
TGSGMPGEKGDPGPQGFPGLTGAPGKNGVPGLPGLPGLRGDGGQGFPGEKGFPGLPGEKG
HHGPTGPPGLGLPGLPGPHGLPGDKGIDGLPGQKGLRGPPGITLPCIIPGSYGPSGFPGA
PGFPGPKGARGLPGTAGQPGSRGKKGEPGNPGLVHLPELPGFPGSRGEKGLPGFPGIPGK
DGLPGKAGSPGLPGSKGAPGDVFGAENGVPGEQGLQGLPGDRGFLGDSGLPGPKGLHGKS
GLLGPKGERGSPGTPGQVGKPGPPGSVGSYGIKGKSGVPGAPGLPGTSGHPGKKGQKGEK
GYSGSTRKRGLPGIKGLPGSPGLTGFLGSPGLPGVTGLPGLPGPKGEKGSTGLVGFPGIP
GLPGIPGASGLKGIPGSAGKVGTSGQAGIPGEKGDRGDPGPVGVPSPRPPMLNLWFKGDK
GSQGSAGSNGFPGPRGDKGEAGRPGSPGLPGAPGFPSTIKGLTGMPGPPGSMGLRGLPGL
KGSPGITGFPGMPGESGSQGLIGAPGLPGAFGLPGSKGDQGQTFEISGIPGPKGQPGESG
FKGVKGKSGLVGDIGFPGNKGDHGKVGIPGDVGLPGSPGLPGIAGMRGDPGLPGSSGHPG
TTGLPGPSGLIGPKGLPGPLGLHGLNGLPGTKGTHGTPGASITGVPGPAGLPGPKGEKGT
PGIVIGAPGKPGPRGQKGGRGFPGLQGPAGSPGAPGISLPSVMTGQPGDPGPPGLDGERG
RPGPHGPPGPSGPSSDQGDPGDPGFPGISGLLGPKGHQGIPGFPGLPGELGLKGMRGEPG
FMGTPGKIGPPGDPGFPGIKGKAGPRGFSGPQGAPGQTPIAEAVQVPPGPLGLPGIDGIP
GLPGDPGIQGPVGLQGFKGLPGIPGKDGPSGLPGPPGALGDPGLPGLQGPPGFEGAPGKQ
GPFGRPGIPGHSVRVGYTLVKHSQSEQVPLCPTGMSQLWVGYSLLFVEGQEKAHNQDLGF
AGSCLPRFSTMPFIYCNINEVCHYARRNDKSYWLSTTAPIPMMPVGQTQIPQYISRCSVC
EAPSQAIAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRAT
PFIECSGARGTCHYFANKYSFWLTTVEERQQFKEEPVSETLKAGQLHTRVSRCQVCMKRL
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtttt
ccctgtaagtatctgttgtcaggtacagcaatttggatcctgggatcagccaaagatgaa
ttcggacaggggcgacctggaccaattggatttcaaggtcccacaggtcctgaaggcttt
gctggccctactggtttatcaggattgaaaggggaaaagggctccccaggccctctggga
ccatatggaccaaaaggagataagggtcccatgggagttcctggctttcttggcatcaat
gggattccgggccaccctggacagccaggccccagaggtccacctggcctagatggctgt
aatggaactagaggagctgttggatttccaggccctgatggctatcctgggattcttgga
ccacctgggctccctggtcagaaaggctcaaaaggggaacctattccttctccagggagt
ttcgcaggaatgaagggggatcctggattacctggactggatggaatccctggcccacgt
ggaccacctggatctcctggagattcaggatccaaaggaccaccaggattacaaggtcct
ccaggcccccctggtttccctggtcctgatggaaatatggggttaggtttccaaggagag
aaaggagtcaagggggatgttggcctccctggccccgcaggaccaccaccatctactggg
gaactagaattcatgggattccccaaagggaagaaaggctccaagggtgaaccagggcct
ccaggattcccaggcatgagtggccctccagggttcccggaacttggatctattggtgaa
aagggagaaaagggaatccctggtttgccaggacctaggggtcctattggtttagaagga
gtcccaggccctccagggacacagggcatgatggggcctccaggttttcctgggctgaat
ggatttccaggagttaagggtgaaaagggtggcattggcctgccaggcccagacatcgat
gaaggtggtgctgtgatctcaggttatcctggggaccccggtataccaggcctcccaggc
cttaaaggagatgaaggcatccagggccagcgtggcccttctggcccccctggtctccca
gccttaacaggcataccaggtgccctaggacctcagggatttccaggcctgaaaggagac
caaggaaacccaggccccaccacagttggccttcctggaagaattggtttcccaggccta
ccaggcccaccaggcccaccaggcccacctggttcaccatttaagactggaaccttatat
ggcctagaaccgggattccctggtctccgaggagaacgaggtccaaaaggaagcccaggt
ttcaaaggagtaaaaggggactcaggattttgtgcttgtgatggtggtgtccccaatact
ggcccacccggagaaccaggtctgcctgggccacaaggtctcatgggccttccaggcctt
aaaggaaccagaggagatccaggctcagtgggcacacaaggcccagcaggggctccagga
ttgtttgggcctccaggtcttgtaggccccaaaggaaagaagggtgaaccaactctcagt
acaggatctggcatgccaggggagaaaggtgatcctggcccccaagggttccctggtcta
acaggagccccaggcaagaatggagtaccaggtttaccaggtctgccaggccttcggggt
gatggtggacagggcttcccaggtgaaaaggggttcccaggacttcctggtgaaaaaggc
catcatggtccaactggccctccaggacttgggctaccaggacttcctggaccccatggg
cttcctggagataaaggaatagatggattgccagggcaaaaaggcctccgaggacctcca
ggaattaccttgccttgtattattcctggatcatacggtccatcaggattcccaggagct
cccggattcccaggccctaaaggggcccgtggcctccctgggactgcaggtcagcctgga
tctcgtggaaaaaaaggagagcctggaaatccaggattagttcacctccctgaattgcca
ggatttcctggatctcgtggagagaagggcttgcctggatttcctgggattcctggaaaa
gatggcttgcctgggaaggctggaagtccaggtttaccaggttccaagggagcccctggt
gacgtctttggtgctgaaaatggtgttccaggggagcaaggcctacaaggattgccaggg
gacagaggatttcttggagactctggccttccaggacccaagggtttgcatggaaagtct
ggcctgctaggccccaaaggtgagcggggcagccctggaacaccaggacaagtgggaaag
ccaggccccccagggtctgttggttcatatggcatcaagggcaaatctggagtcccagga
gcaccaggtcttccaggaacttcaggacatcctggaaagaaaggtcaaaaaggcgagaaa
ggttactctggatcaactagaaaaagaggtttacctgggataaaaggccttcctggatct
ccggggctaactggcttcttggggagcccaggtttgccaggagtcactggattgccaggc
ctcccaggcccaaagggtgagaaggggtccactggactggtaggttttccgggcattccg
ggtctccctggtattcctggtgcaagtggattaaaggggattcctgggtcagccggaaaa
gtgggaacatctggacaggctgggattcctggtgaaaaaggagacagaggtgatccgggt
ccagttggagtacccagtccaagacctccaatgctgaacctatggttcaaaggagacaaa
ggctctcagggctcagctggatcaaatggatttcctgggcccagaggtgacaaaggtgag
gctggccgtccagggtcaccaggcctgcctggagctcctggtttccccagcactatcaaa
ggacttactgggatgccaggcccacctggatccatgggcctacggggcttacctggcctg
aaggggtccccagggatcacaggtttcccaggaatgccaggagaaagtggttcacaaggt
ctcattggggctcctggactcccaggagcatttggtctcccaggctcaaaaggagatcag
ggccagacatttgaaatttctggtatcccaggacccaagggccagcctggtgaatcaggt
tttaaaggtgtgaaaggaaaaagtggactggttggtgatataggttttcctggaaacaag
ggtgatcatggaaaagttggtattcctggagatgttggtcttcctggctccccaggactt
ccagggattgcaggtatgagaggagacccaggacttccaggttcttctggtcatccaggg
acaactgggcttccaggaccctctggattaataggacctaaaggattgcctggacctctt
ggtttacatggcctaaatgggcttccaggcaccaaggggacccatggaactccaggagcc
agtattactggtgtgcctgggcctgctggccttcctggtcccaaaggggaaaaaggaaca
ccaggaattgtcattggagctccagggaaaccaggcccaagaggacaaaaaggtggccga
ggtttcccaggtctccaaggccctgctggttcccctggtgccccaggcatctccttgccc
tcagtcatgacaggacagcctggtgaccctggaccaccaggcctagatggagaacgaggt
cgcccaggccctcatgggcccccaggcccctctgggccatcctcggatcaaggtgaccct
ggagaccctggcttccctggaatttctggccttcttgggcccaagggacaccaaggaatt
ccaggtttccctgggctccctggagaactaggactgaaaggcatgagaggtgagcctggc
ttcatggggactccaggcaagattgggccacctggagatccaggattccctgggataaag
gggaaggcagggccaagaggcttctccggtccccaaggtgctcctggacaaacacccatt
gcagaagctgtccaggttccgcctggacccttgggtcttccaggcattgatggcatccct
ggtctcccaggggaccctggcattcaaggccctgttggtcttcaaggcttcaaaggttta
cctggcattcctggcaaagatgggcccagtgggcttccaggcccaccgggggcccttggt
gatcctggtctccctggactgcaaggccctccaggatttgaaggagctccagggaagcaa
ggcccctttgggaggcccggaatacccgggcacagcgtgagagtgggctacacattggtg
aagcacagccagtcggaacaggttcccctgtgccccactgggatgagccaactgtgggtg
ggttacagcttgctgttcgtggaggggcaggagaaagcccacaatcaggaccttggtttt
gctggctcctgcctacctcgcttcagcaccatgcccttcatctactgcaacatcaatgaa
gtgtgtcactatgctaggcgcaatgataaatcctactggctctctaccactgcccccatt
cccatgatgcctgttggccagacccagattccccagtacatcagccgctgctctgtgtgt
gaggctccttctcaagccattgccgtgcacagccaggacatcaccatcccacagtgtccc
ctgggctggcgcagcctctggattgggtactcattcctcatgcacactgctgctggggcg
gagggtggaggccagtccctggtctcccctggctcctgcctcgaggactttcgggccact
cctttcatcgagtgcagtggtgcccgaggcacctgccactactttgccaacaagtacagt
ttctggttgacgacagtggaagaaaggcagcagtttaaggaggagccagtgtctgaaaca
ctgaaagctggccagctccatacccgggtcagccgctgccaggtgtgtatgaaaagactg
tag
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