Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101960625
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Entry
101960625 CDS
T10664
Symbol
Als2
Name
(RefSeq) alsin isoform X1
KO
K04575
amyotrophic lateral sclerosis 2 protein
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti05014
Amyotrophic lateral sclerosis
iti05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
101960625 (Als2)
05022 Pathways of neurodegeneration - multiple diseases
101960625 (Als2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
iti03036
]
101960625 (Als2)
Chromosome and associated proteins [BR:
iti03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
101960625 (Als2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DH_Alsin
WD40_RLD
RCC1
RCC1_2
MORN
VPS9
PH_alsin
Alsin_RLD
RhoGEF
HA_Alsin
DH_ALS2
PH
CCDC47
SOS1_NGEF_PH
Motif
Other DBs
NCBI-GeneID:
101960625
NCBI-ProteinID:
XP_005338967
UniProt:
I3MQY3
LinkDB
All DBs
Position
Unknown
AA seq
1657 aa
AA seq
DB search
MDSKKRSSTEAEGSKERGLVHVWQAGSFSIIPERLPGWGGKTVLQAALGVKHGVLLTEDG
EVYSFGTLPWRSESAEICPDSPILENALVGQHVVTVATGSFHSGAVTESGVVYMWGENSA
GQCAVANQQYVPEPNPVSISDSETSPLLAVRILQLACGEEHTLALSISREIWAWGTGCQL
GLITTTFPVTKPQKVEHLAGRVVLQVACGAFHSLALVQCLPSQDLKPVPERCTQCSQLLI
TMTDKEDHVIISDSHCCPLGVTLSESQAENHASSAISPSAETLDSQGGVFENTLIEAGLP
LATELNIESTPTTSGDTTSSQQNIQGTTEISSARNIPSYPDTQAVNEYLQKLSDHSVRED
SKNGEKSMPPQPLVEEAVPNLHSPPTTSTSALNSLVVSCASAVGVRVAATYEAGALSLKK
VMNFYSTAPCETGAQAGSSSIGPEGLKDSREEQVKQESMQGKKSSSLVDIREEESEGGSR
RLSLPGLLSQVSPRLLRKAARVKTRTVVLTPTYSGEADALLPSLRTEVWTWGKGKEGQLG
HGDVLPRLQPLCVKCLDGKEVIHLEAGGYHSLALTAKSQVYSWGSNTFGQLGHSDFPTTV
PRLAKVNGENGVWSVAAGQDYSLFLVDTEDFQPGLYYSGRQDPEEGDSHPENPSGTKTPV
LLSCSKLGYISRVTAGKDSYLALVDKNIMGYIASLHELATTERRFYSKLSDIKSQILRPL
LSLENLGTVPAVQLLQEVAGRFSKLCYLIGQHGASLSSFLQGIKEARSLVILKHASLFLD
SYTEYCTSITNFLVMGGFQLLAKPAIDFLNKNQELLQDLSEVNDESTQLMEILNTLFFLP
IRRLHNYAKVLLKLATCFEVTSPEYQKLQDSSSCYESLALHLGRKRKEAEYTLGFWKTFP
GKMTDSLRKPERRLLCESSNRALSLQHAGRFSVNWFILFNDALVHAQFSTHHVFPLATLW
VEPLSEEAGNVNGLKITTPEEQFTLISSTPQEKTKWLRAISQAVDHALRGTSDLPPYGSG
SSVQRQEPPISRSAKYTFYKDPRLKDATYDGRWLSGKPHGRGILKWPDGKMYSGLFRNGL
EDGYGEYRIPNKALNKEDHYVGHWKEGKMCGQGVYSYASGEVFEGCFQENMRHGHGLLRS
GKLTSSSPSMFIGQWVMDKKAGYGVFDDITRGEKYMGMWQDDVCQGNGVVVTQFGLYYEG
NFHLNKMMGNGVLLSEDDTIYEGEFSDDWTLSGKGTLTMPNGDYIEGYFSGEWGSGIKIT
GTYFKPSLYENDKDKPKVFRKLGNLAVAADEKWRAVFDECWHQLGCESPGQGDVWKAWDN
IAVALTTNRRQHRDSPEILSRSQTQTLESLEFIPQHVGAFSVEKYDDIKKYLIKACDTPL
HPLGRLVETLVAVYRMTYVGVGANRRLLQEAVKEIKSYLKRIFQLVRFLFPELPEEGSTI
PLSAPLPSERKSFCTGKSDSRSESPEPGYVVTSSGLLLPVLLPRLYPPLFMLYALDNDRE
EDIYWECVLRLNKQPDIALLGFLGVQRKFWPVTLSILGESKKVLPTTKDACFASAVECLQ
QISTTFTPSDKLKVIQQTFEEISQSVLASLQEDFLWSMDDLFPVFLYVVLRARIRNLGSE
VHLIEDLMDPYLQHGEQGIMFTTLKACYYQIQREKLN
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atggactcaaagaagagaagttcaacagaagcagaaggatccaaagaaagaggcctggtc
catgtctggcaggcgggatccttttccatcataccagagagattgccaggctggggagga
aagactgttcttcaagcagcccttggagtgaaacatggagttcttttgactgaagatggt
gaggtctacagctttgggactcttccttggagaagcgaatcagcagaaatttgtccagat
agtcccattctagaaaatgccctggttgggcaacatgttgttactgtggcaacagggagc
ttccacagtggagcagtgacagaaagtggggtagtgtacatgtggggggagaattctgcg
ggtcagtgtgcagtagctaaccagcagtacgtgccagaaccgaatcctgtcagcatttct
gattctgaaaccagccctttgttggcagtcaggattttgcagttggcatgtggcgaagag
cacactctggcattgtcaataagcagagagatttgggcatggggtaccggttgtcagttg
ggtctcatcaccactaccttcccagtgacaaagccacaaaaggtggaacatcttgctggg
cgcgtagtgctacaagtcgcctgtggtgctttccacagcctggcacttgtgcagtgcctc
ccttcccaggacctgaagccagtccctgagagatgcactcagtgcagccagctcctcatt
accatgactgacaaagaggaccatgtgattatctcagacagtcactgttgccctttaggt
gtgacactatcagaatcccaggcagaaaaccacgccagctctgccatcagcccctctgct
gagacccttgacagtcagggaggagtgtttgagaacacgcttatagaagctggactgccg
cttgccaccgaattgaacattgaaagcacccccaccacaagtggtgatactacttcctcc
caacaaaacatccagggaacaactgaaatttcttctgccagaaacataccatcataccct
gacacccaggcagtaaatgaatacttgcagaaactgtcagatcattcagtaagggaggat
tcaaagaatggtgaaaagtcaatgccacctcagcctcttgtagaagaagcagttcctaat
cttcacagcccaccaaccacaagcacctcagccctcaacagcctggtggtctcttgtgca
tctgctgttggtgtgagagtggctgctacctatgaggctggggccttgtctcttaagaaa
gttatgaacttttatagtacagccccttgtgaaactggagcgcaggcaggcagtagttcc
ataggcccagaaggtctgaaagacagcagagaagaacaggttaaacaggagtcaatgcaa
ggaaagaaaagttcaagtcttgtggatatcagggaagaagaatcagaaggaggcagtcga
agactctccctccctggattactgtcacaagtatctcccaggctcttaagaaaagctgca
cgggtgaaaaccaggacagtggttctgactcccacatatagtggagaagcagatgccctt
ctgccttctctgagaacagaggtgtggacctgggggaaaggaaaggaagggcagttgggg
catggcgatgttctgcctaggcttcagccattgtgtgtaaagtgtctggatggtaaagaa
gtgatccacctggaggcaggtggttaccattctcttgcacttactgccaaatcccaggtt
tactcgtggggtagcaatacctttggtcaacttgggcattccgattttccaacaacagtt
cctcgtcttgcaaaggtaaatggtgaaaatggagtctggagtgtagctgcaggccaggat
tattccctgtttttagtggatacagaagacttccagcctgggttgtattacagtggccgg
caggaccctgaagaaggtgacagccatccagagaatcccagtggtactaagactccagta
cttctctcctgtagtaagcttggatatataagcagagtaacagcaggaaaagacagctac
ctagccttggtggacaaaaacattatggggtatattgccagtctccatgaattggctact
acagaaagacgattctattcaaaactaagtgatatcaaatctcagatactcaggcctctt
ctcagtttagaaaatttgggcactgtgcctgcagtccagctgttacaggaggtggcaggc
cgtttcagcaagctgtgttacttaattggtcagcatggagcctccctgagcagcttcctt
caggggataaaggaagccaggagtttggtcattctgaaacatgcaagtctcttcttggat
agttatacagagtattgcacatcaattacaaatttcctggttatgggaggattccaactt
cttgctaaacctgccattgatttcttaaataaaaaccaagagctgctgcaagacttatca
gaagtaaacgatgaaagcactcagttgatggaaatactgaatacattgtttttcttgcca
attagacggcttcataattatgcaaaagttttgctaaagcttgctacttgttttgaagtg
acatctccagaatatcagaaactgcaggattccagttcttgttatgagtctcttgctctc
catctcggcaggaaaaggaaggaagcagagtacacactgggcttctggaagacttttcct
ggaaaaatgacggattccttgaggaagccagagcgtcgactgctatgcgaaagtagtaac
cgagccctctctctgcagcatgctgggaggttttctgtgaattggttcattctctttaat
gatgctctggtccatgcccagttctccacacaccatgtattccctttggccacactgtgg
gtggagccactttctgaagaagctggtaatgtgaatggcctaaagataactacacctgaa
gaacaattcactctcatttcatcaacaccccaggaaaagactaagtggctacgagccata
agccaagctgtggatcacgctttgaggggcacatctgatcttccaccttatggaagtggt
agcagtgttcagaggcaggaaccacctatttcacgcagtgccaaatatacattctacaag
gatcctcgcctaaaggatgccacttatgatgggcggtggctatcagggaaacctcatggc
agggggatcttgaagtggcctgatggaaaaatgtattctggcttattcaggaatggcttg
gaagatgggtatggagaatacagaattccaaacaaggctctgaacaaagaagaccattat
gtgggccactggaaagaaggaaaaatgtgtggtcaaggagtctatagttatgcctctggt
gaagtgtttgaaggctgctttcaagagaacatgcgtcatggtcatggtctccttcgaagt
ggaaaactgacttcttcttctcccagtatgttcattggccagtgggtaatggataagaaa
gcaggatatggtgtctttgatgatatcactaggggagaaaagtacatgggaatgtggcaa
gatgatgtgtgtcaagggaatggtgtggtcgttacccagtttggattgtactatgaaggc
aacttccaccttaataaaatgatgggaaatggggttttactttctgaagatgatactatc
tacgaaggagaattttctgatgactggactcttagtggaaagggaacactgaccatgcca
aatggagattatattgaaggatactttagtggagaatggggatctgggataaaaatcact
ggaacctactttaaacctagtctgtatgagaatgacaaagacaaacccaaagttttcagg
aagctaggaaacctggcagtggctgctgacgagaagtggagagcagtatttgatgaatgt
tggcatcagctgggctgcgagagcccaggccaaggggatgtttggaaagcctgggacaat
attgctgtggccttgaccaccaatcggcgccagcacagagacagtccagaaatactaagt
cgttcacaaactcagacactagaaagtttggaattcattccacagcatgttggtgccttc
tctgtggagaaatatgatgatatcaagaagtacttaataaaggcctgtgacacccctctg
caccctctgggcaggcttgtggagacactggttgcagtatatagaatgacatatgtgggt
gtgggagccaaccgccgattattgcaggaggctgtaaaggagattaagtcctatcttaag
cgaatcttccagctggtgaggttcttatttcctgaacttccagaagagggcagcacaatt
cctctctctgctcctctgccatcagaaaggaagtcattttgcacaggaaagtcggattcc
agatctgaatcaccagagccaggttacgttgtaacaagttctggattactgcttcctgtg
ctgctcccccgcctctacccacctctgttcatgctttatgctttggacaatgatcgagag
gaagacatttactgggaatgtgttcttcgactaaacaagcagccagatattgctctcctg
ggctttcttggagtacagaggaaattttggccagtgaccttgtcaatccttggagagagt
aaaaaggttttgccaaccacaaaagatgcttgctttgcctcagcagtagagtgtctgcag
cagatcagcacaacatttaccccatcagacaaacttaaggttatccagcagacttttgag
gagatctctcagagtgtcctggcatcgctgcaggaagactttttgtggtccatggatgac
ttgttccctgttttcttatatgtggtgctacgggccaggattaggaatttaggctctgag
gtacatctcattgaggatctaatggacccctatcttcagcatggggaacagggcataatg
ttcaccaccttgaaggcatgttactaccagattcagcgtgagaagcttaactag
DBGET
integrated database retrieval system
