Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101960860
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Entry
101960860 CDS
T10664
Symbol
Actn1
Name
(RefSeq) alpha-actinin-1 isoform X1
KO
K05699
actinin alpha 1/4
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04510
Focal adhesion
iti04520
Adherens junction
iti04530
Tight junction
iti04670
Leukocyte transendothelial migration
iti04810
Regulation of actin cytoskeleton
iti05146
Amoebiasis
iti05203
Viral carcinogenesis
iti05322
Systemic lupus erythematosus
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101960860 (Actn1)
04520 Adherens junction
101960860 (Actn1)
04530 Tight junction
101960860 (Actn1)
09142 Cell motility
04810 Regulation of actin cytoskeleton
101960860 (Actn1)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
101960860 (Actn1)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
101960860 (Actn1)
09174 Infectious disease: parasitic
05146 Amoebiasis
101960860 (Actn1)
09163 Immune disease
05322 Systemic lupus erythematosus
101960860 (Actn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
iti04131
]
101960860 (Actn1)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
iti04812
]
101960860 (Actn1)
04147 Exosome [BR:
iti04147
]
101960860 (Actn1)
Membrane trafficking [BR:
iti04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
101960860 (Actn1)
Cytoskeleton proteins [BR:
iti04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
101960860 (Actn1)
Exosome [BR:
iti04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
101960860 (Actn1)
Exosomal proteins of colorectal cancer cells
101960860 (Actn1)
Exosomal proteins of bladder cancer cells
101960860 (Actn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
EFhand_Ca_insen
EF-hand_8
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_5
XisI
Motif
Other DBs
NCBI-GeneID:
101960860
NCBI-ProteinID:
XP_005322881
LinkDB
All DBs
Position
Unknown
AA seq
914 aa
AA seq
DB search
MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR
DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV
KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC
ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT
YVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENR
VPENTMHAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGRM
VSDINNAWGCLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHEAWTDGKEAMLRQK
DYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKIC
DQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHT
IEEIQGLTTAHEQFKATLPDADKERLAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEI
NGKWDHVRQLVPRRDQALTEEHARQQHNERLRKQFGAQANVIGPWIQTKMEEIGRISIEM
HGTLEDQLSHLRQYEKSIVNYKPKIDQLEGDHQLIQEALIFDNKHTNYTMEHIRVGWEQL
LTTIARTINEVENQILTRDAKGISQEQMNEFRASFNHFDRDHSGTLGPEEFKACLISLGY
DIGNDPQKKTGMMDTDDFRACLISMGYNMGEAEFARIMSIVDPNRLGVVTFQAFIDFMSR
ETADTDTADQVMASFKILAGDKNYITGDELRRELPPDQAEYCIARMAPYNGPDSVPGALD
YMSFSTALYGESDL
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggaccattatgattcacagcaaaccaatgactacatgcagcccgaagaggactgggac
cgggacctgcttctggacccggcctgggagaagcagcagagaaagacattcacagcatgg
tgcaactcccacctgcggaaggcgggcacgcagatcgagaacatcgaggaggacttccga
gatggcctgaagctcatgctgctgctagaggttatctcaggcgaacgcttggccaagccg
gagagaggcaagatgcgggtccacaagatctccaatgtcaacaaggccctcgatttcata
gcaagcaaaggggtcaaactggtgtccattggtgccgaggaaatcgtggatgggaatgtg
aaaatgaccctgggcatgatctggaccatcatcctccgctttgccatccaggacatctct
gtggaagagacctcagccaaggaagggctgctcctgtggtgtcagaggaagacggcccct
tacaaaaatgtcaacatccaaaatttccacatcagctggaaggatggccttggcttttgt
gccttgatccaccgacaccggcctgagctgattgactacgggaagctgcggaaggatgat
ccactcacaaacctgaacacggccttcgatgtggcagagaagtatctggacatccccaag
atgcttgatgctgaagacatcgttggaactgctcggcctgatgagaaagccatcatgact
tacgtgtccagcttctaccatgccttctctggagcccagaaggcggagacagctgccaat
cgcatctgcaaggtactggccgtcaaccaggagaacgagcagctaatggaagactacgag
aagctggccagcgatctgctggagtggatccgccgcaccatcccctggctggagaaccgg
gtgcccgagaacaccatgcacgccatgcagcagaagctggaggacttccgcgactaccgg
cgcctgcacaagccgcccaaggtgcaggagaagtgccagctggagatcaacttcaacacg
ctgcagaccaagctgcgcctcagcaaccggcctgctttcatgccctccgagggcaggatg
gtctcggacatcaacaatgcctggggctgcctggagcaggcagagaagggctatgaggag
tggctgctgaatgagatccggaggctggagcggctggaccacctggcggagaagttccgg
cagaaggcctccatccacgaggcttggacggatggcaaagaggccatgctgcggcagaag
gattatgagacggccaccctgtctgagatcaaggccctgctcaagaagcacgaggccttc
gagagcgatctggctgcccaccaggaccgcgtggagcagatagcggccatcgcacaggaa
ctcaatgagctcgactattacgactcacccagtgtcaatgctcgctgccaaaagatctgt
gaccagtgggacaatctgggagctctaactcagaagcgaagggaagctctagagcggacg
gagaagctactggagaccattgaccagctgtacctggagtacgccaagcgggccgctccc
ttcaacaactggatggagggcgccatggaggacctgcaggacaccttcatcgtgcacacc
atcgaggagatccagggactgactacagcccacgagcagttcaaggccaccctccctgat
gctgacaaggagcgcctggccatcctgggcatccacaacgaggtgtccaagatcgtccag
acctaccatgtcaacatggcaggcaccaacccctacacaaccatcacgcctcaggagatc
aatggcaaatgggaccacgtgcggcagcttgtgccgcggagggaccaagctctgaccgag
gaacatgcccgccagcagcataacgagaggctacgcaagcagtttggggcccaggccaac
gtcatcggaccctggatccagaccaaaatggaggagattgggaggatctccattgaaatg
catgggaccctggaggaccagctcagccacctgcgacaatatgagaagagcattgtcaac
tacaagccaaagattgaccagctggaaggtgaccaccagctgatccaggaggctctcatc
tttgacaacaagcacaccaactataccatggagcacatccgcgtgggctgggagcagctg
ctcaccaccatcgccaggaccatcaacgaggtggaaaaccagatcctgacacgggatgcc
aagggcatcagccaggagcagatgaatgagttccgggcctctttcaaccactttgaccgg
gatcactccggcacgctgggtcctgaggagttcaaagcctgcctcatcagcttgggctat
gacattggcaacgacccccagaagaagacaggcatgatggacacggatgatttccgcgcc
tgccttatctccatgggttacaacatgggagaggcagaatttgcccgcatcatgagcatc
gtggaccccaaccgcctgggggtagtgacattccaggccttcattgacttcatgtcccga
gagacggctgacacggatacagcagaccaggtcatggcttccttcaagatcctggccgga
gacaagaactacatcacaggtgacgaactgcgccgagagctgccgcccgaccaggccgag
tactgcatcgcaagaatggccccctacaacggcccagactccgtgcccggtgctctggac
tacatgtccttctccacggcactgtatggcgagagtgacctctaa
DBGET
integrated database retrieval system
