Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101961209
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Entry
101961209 CDS
T10664
Symbol
Col6a2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04151
PI3K-Akt signaling pathway
iti04510
Focal adhesion
iti04512
ECM-receptor interaction
iti04820
Cytoskeleton in muscle cells
iti04974
Protein digestion and absorption
iti05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101961209 (Col6a2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101961209 (Col6a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101961209 (Col6a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101961209 (Col6a2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101961209 (Col6a2)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
101961209 (Col6a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
iti04147
]
101961209 (Col6a2)
00536 Glycosaminoglycan binding proteins [BR:
iti00536
]
101961209 (Col6a2)
Exosome [BR:
iti04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
101961209 (Col6a2)
Glycosaminoglycan binding proteins [BR:
iti00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101961209 (Col6a2)
Hyaluronan
Extracellular matrix or blood plasma proteins
101961209 (Col6a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Ins134_P3_kin_N
Motif
Other DBs
NCBI-GeneID:
101961209
NCBI-ProteinID:
XP_005340237
UniProt:
I3N8C7
LinkDB
All DBs
Position
Unknown
AA seq
1020 aa
AA seq
DB search
MLQGPFSALLLLGGLLGVLHAQQQEVISGGTSERNNNCPEKADCPVNVYFVLDTSESVTM
QSPTDSLLYHMQQFVPQFISQLQNEFYLDQVALSWRYGGLHFSDQVEVFSPPGSDRASFT
KSLQNIRSFRRGTFTDCALANMTQEIRQHVGRGVVNFAVVITDGHVTGSPCGGIKLQAER
AREEGIRLFAVAPNRNLNEQGLRDIASAPHELYRNNYATMRPESTEIDQDTINRIIKVMK
HEAYGECYKVSCLEIPGPPGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGP
KGVPGFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDPGTRGPDGYPGE
AGSPGERGDQGAKGDSGRPGRRGPPGDPGDKGSKGYQGNNGAPGSPGVKGAKGGPGPRGP
KGEPGRRGDPGTKGGPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAQGDRGLPGPRGPQGA
LGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGTPGEKGEPGPRGPEGGR
GDFGMKGGPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPPGDPGLTECDVMTYVR
ETCGCCDCEKRCGPLDVVFVIDSSESIGYTNFTLEKNFVINVVNRLGAMAKDPKSETGTR
VGVVQYSHEGTFEAIQLDDERINSLSSFKEAVKNLEWIAGGTWTPSALKFAYNKLIKDSR
RHKTRVFAVVITDGRHDPRDDDLNLRALCTGDVTVTAIGIGDMFHERHESENLYSIACDK
PQQVRNMTLFSDLVAERFIDDMADVLCPDPQIVCPELPCQTELYVAQCTQRPVDIVFLLD
GSERLGEQNFHKARGFVEEVSRRLTLARREDDPLNARVALVQYGGQQEQQVAFPLTSNLT
VIHEALQDLRYLNSFSHVGTGIVHAINTVVRGAQGGARRHAELSFVFLTDGVTGNASLEE
SVHSMRKQNVVPTVVAVGSDVDMDVLHKISLGDRSAIFREKDFDSLVQPGFFDRFIRWIC
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgctccagggccccttctccgcgctcctcctgctcggggggctcctgggggtcctccat
gcccagcagcaggaggtcatctcggggggcacttctgagcggaacaacaactgcccagag
aaggccgactgccccgtcaacgtgtacttcgtgctggacacctcggagagcgtgaccatg
cagtcccccacggacagcctgctctaccacatgcagcagtttgtgccgcagttcatcagc
cagctgcagaacgagttctacctggaccaggtggccctgagttggcgctacgggggcctg
cacttctcggaccaggtggaggtgttcagcccgccaggcagtgaccgggcctccttcacc
aagagcctgcagaacatccgctccttccgccggggcaccttcactgactgcgcgctggcc
aacatgacccaggagatccggcagcacgtgggccgcggcgtggtcaacttcgccgtggtc
atcaccgacggccacgtcaccggcagcccatgtgggggcatcaagctgcaggctgagcgg
gcccgcgaggaaggcatccggctcttcgctgtggcccccaacaggaacctgaatgagcag
ggcctccgggacatcgccagcgccccccacgagctctaccgcaacaactacgccaccatg
cggcccgagtccaccgagatcgaccaggacaccatcaaccgcattatcaaggtcatgaaa
cacgaggcctatggagagtgctacaaggtgagctgtctggagatccctggaccaccaggc
cccaagggctaccgtggacagaagggtgccaagggcaacatgggtgagccaggagagccc
ggacagaaggggcgacagggagatccaggcatcgagggccccatcggattcccaggaccc
aagggtgttccaggcttcaaaggagagaagggtgaatttggagctgacggtcgaaagggg
gctccaggcttggccggcaagaatgggactgatggccagaagggcaagctgggccgcatc
gggcctcctggctgcaagggagaccctggaacccggggccctgacgggtacccgggggag
gctggaagcccaggcgagcggggagaccaaggcgccaagggggactctggccgcccagga
cgcagagggcctccaggagaccctggagacaagggaagcaagggttaccaaggcaacaac
ggagccccgggcagtcctggcgtgaaaggagccaagggggggcctgggccgcgcggaccc
aaaggcgagcccgggcgcaggggagaccccggaaccaagggcggccccggcagtgacggt
cccaagggagagaagggggaccctggcccagaagggccccggggcctggccggagaggtc
ggcaacaaaggagcccagggagaccgaggattgcctggacccagaggcccccagggggcc
cttggggagcccggaaagcagggatctcggggagaccctggtgatgctgggccccgcgga
gactcgggacagccaggccccaagggagaccctggcaggcctggattcagctacccggga
ccccggggtacccccggagagaaaggcgagcccggcccccgtggcccagagggaggccga
ggggacttcggcatgaaaggaggacctgggaggaaaggagagaagggggagcccgcagat
cctggtccccctggtgagccaggcccccgggggccgagaggagtcccaggacctgagggt
gagcccggcccccccggagaccccggcctcacggagtgtgacgtcatgacctacgtgagg
gagacctgcggctgctgtgactgcgagaagcgctgtgggcccctggacgtggtcttcgtc
atcgacagctcagagagcatcggctacaccaacttcaccctggagaagaactttgtcatt
aacgtggtcaacaggctgggggccatggccaaggaccccaagtcagagaccgggacccgc
gtgggcgtggtgcagtacagccacgagggcaccttcgaggccatccagttggacgacgag
cgcatcaactctctgtccagcttcaaggaggccgtcaagaacctggagtggattgcgggc
ggcacctggacaccgtcagccctcaagttcgcctacaacaagctcatcaaggacagccgc
cgccacaagacccgcgtgttcgctgtggtcatcacggatgggcgccatgacccgcgggac
gacgacctgaacctgcgggccctgtgcacgggtgacgtcaccgtgacggccatcggcatt
ggggacatgttccacgagcgccatgagagcgagaacctgtactccattgcctgtgacaag
ccgcagcaggtgcgcaacatgaccctcttctcagacctggtggccgagcgcttcatcgac
gacatggcggacgtcctctgccctgacccgcagatcgtgtgcccggagcttccctgccaa
acagagctgtacgtggcacagtgtacgcagcggccagtggacatcgtcttcctgctggac
ggctctgagcgactgggagagcagaacttccacaaggcacgcggcttcgtggaagaggtg
tcccggcgcctgacgctggcccgcagggaggacgacccgctcaatgcccgtgtggccttg
gtgcagtacggtggccagcaggagcagcaggtggccttcccgctgacctccaacctgacg
gtcatccacgaggctctgcaggacctgcgctacctcaactccttctcccacgtgggcaca
ggcatcgtgcacgccatcaacactgtggtgcggggtgcgcagggcggggcgcggcgccac
gcggagctgtcctttgtgttcctcaccgacggcgtcaccggcaacgccagcctggaggag
tccgtgcactccatgcgcaagcagaacgtggtgcccaccgtggtggccgtgggcagcgat
gtggacatggacgtgctgcacaagatcagcctgggcgacaggtcggccatcttccgggag
aaggactttgacagcctggtgcagcccggcttcttcgacaggttcatccgctggatctgt
tag
DBGET
integrated database retrieval system
