Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101961214
Help
Entry
101961214 CDS
T10664
Symbol
Setx
Name
(RefSeq) probable helicase senataxin isoform X2
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti05014
Amyotrophic lateral sclerosis
Brite
Enzymes [BR:
iti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101961214 (Setx)
5.6.2.5 RNA 5'-3' helicase
101961214 (Setx)
Transcription machinery [BR:
iti03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101961214 (Setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
101961214
NCBI-ProteinID:
XP_005321160
UniProt:
I3NDJ3
LinkDB
All DBs
Position
Unknown
AA seq
2701 aa
AA seq
DB search
MQIVTHSQISQAVSTEEHNSAGCLPRYRMSTCCWCTPGGISTIDFLKCYASKTLTSEFQT
ADEDLCYCLECVAEYHKARDELPFLHKVLWELETLRLINHFEKSMKAEIGDYVDLYIVDN
GEAQPLDFTGQDFENKLRVPLLEILKYPYLLLHERVNELCVEALCQMEQANCSFQVFDKH
PGIYLFLVHPNETVRRWAILTARNLGKVDRDDYYDLQEVLTCLFKVIELGLLENPDIYTS
SVLEKGKLILLPSHMYDTTNYKNYWLGICMLLTILEEQAMDSLLLGSDKQNDFMQSILHT
MERQSDDDSVDPFWPALHCFMVILDRLGSKVWGQLIDPIEAFQTIINNVSYNREIKNIRN
SSIRTKLEPESYLDDMVTCSQIVYNYNPEKAKKDSGWRSAICPDYCPNMYEEMETLANVL
QSDIGQDMRVHNSTFLWFIPFVQSLMDLKDLGVAYIVEVIHHLYSEVKDVLNQTDAVCDK
VTEFFLLILVSVIELHRNKKCLHLLWVSSQQWVEAVVKCAKLPTTAFARSTEKSSGNCSK
GTAMISSLSLHSMPSNSVQLACVQLIRSLLKEGYQLGQQTLCKRFWDKLNLFLRGNLSLG
WQLTSQETHELQTCLKQIIRNIKVKVPQCSTFVDLTPCKTPPTSFKEESEQIDKSKKDML
CLENSSPTFSKEPMKIDTHQVQESIMIKASSTVEEDGNEQNYMKDLNVEDHPSAESHLQQ
CSKSLFAERAPNQGKASRGVQKSVKESSHMPQSCPSRSGPDKGCGRGIIKSTRSLTDSCT
DCLAKVTTSSEDFSLKDDVLGKTSKPKSKAQKDEICAKLSHVIKKQHRKSTSISDAISLG
ENLTASNMETFYLRKDAGVQKGDGFTHDPSLNPNGIPDGENGEQKSQNSLSLKKKHLKSE
ELDMFSYKNNCKVQDCYADDKDLVSFTEITNTLVKKTSPFKDPVTILKSRNKDVNKSVGL
ISSNLVREQAPGISPKSDTLTDSQVDRDLHKLSLIAQASVIKFPSDSTLKSTSQLQRRVK
DDKRCFTANQNNVVDTCHGQIIVISDSDDDDETILGFEKHIEQGKVSIEKESLAQHDSIV
TTTVEKKLIKEEKTNSLLHFEESDSQFFEFESPSEVFSVWEDHKVDKNSVQETEKSSCVT
HVADSTNNWGYGTEYASEEAVCRVVESVEEHPEPHSSSASLEDLREIQVKKPKRKRFEKP
VSEDPLRPSSSVQNEDHSDVLNERELTENDLQNTDVRTVTPSSSVQRATAVSVKKSPKLR
TYSKPIRRVPVSKTKKTHSDPKKGQNKSSHYLSCRTTPAVVPPKKFRQCPEPTSTVEKLG
LKKAPRKAFELSQRSLEYLVQLRDHGKTVGVVDTQKKTKLISPQTLSVKNNKKLLTSQDL
HSPKQARPKSQQNRQELFGYGSADAPRAGTRRTHNSDILAPESERSDYKSSDALASGDEK
QLRKDFPSEPETKTAKYTSQVTEGACVLNQCDSGGLNGRLPANEGVVSTLETPLTGGDLA
AHRVAVHTEIAALKEVDPESNSDAEDDNLFLTQHDPEDMDLCSQMEYGNDKLIELVHGKD
TVQVEENSVSRPQLESLSVTKCKFKDGIETTKSQGECCSGPSEIKADEDVFRKPGLPLSA
AKPLRPSTTKVFSSKSTSRIANLSKSLENTSLPSALKNKSNGVQSILKVPQPASLVPQKP
AGDGNSLCNVLHSQAPNNSSKQGYKLPFGESKSFSVSSPVNILLSSQSISDTFVKEVLKW
KYEMFLNFDQCGPPASLCQSISRPVPVRFQDCGEYFNVFLPLMILNTFETVAQEWISSPN
KENFYQLHLRKFPADYKKNWEFVVYLEECELAKQLHPKENDLVFLVPERLNGEKKDTERN
RLYDLQEYHCGYVHKFRRTSVVRNGKSECSLCIQTQDNLPANLNDLMKCIIISSLVTTQR
KLKAMSLLSGRNQLARAILSPNPMDFCTTDLPTMTSERIIAYLRDFNEDQKKAIETAYAM
VKQSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENSNAKIKQNRVLVCAP
SNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSINNEVLKFSLDSQVNHR
MKKDLPSHVQEMHRRKEYLDHQLDELSRQRALCRGGREIQRQELDEKIARVSKERQELAS
KIKEVQGRPQKTQSIIILESHIICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCE
VETLTPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFYKLLEEKVEQNTIGR
LPILQLTIQYRMHPDICLFPSNYVYNRSLKTNRLTETNRCSSDWPFQPYLVFDVGDGSER
RDNDSYVNVQEIKLVMEIIKLIKDKRRDVTFRNIGIITHYKAQKTMIQKDLDKEFDRKGP
AEVDTVDAFQGRQKDCVIVTCVRANTMQGSIGFLASLQRLNVTITRAKYSLFILGHLRTL
MENQHWNHLIQDAQKRGAIIKTCDKNYRHDAMKILKLKPVLQRSLTHPPTIAPEVSRPQG
GLPSNKLDSEFAKTSFASSVYHTPSDCREVAVTVTSKDPERPPLQDRLRDPRLLRRLGAD
AKGKFLRDPQPLSPQHPGATSPLGEPGFPVTHQDLGSALPLSAAKLPLQSNHTPPMPGEP
PAASSDASTSKRKCDLEAGLCHRRETRAFSEGEQEKHGSVSYHTKRRLEKEESYSKKRKL
L
NT seq
8106 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatcgtcactcattcacagataagccaagcagtctcaacagaggagcacaactct
gcaggctgtttgccaaggtacagaatgagcacatgttgttggtgtacgccaggtggtatt
tccaccattgacttcctcaagtgctatgcatccaagaccctaaccagtgaattccagaca
gctgatgaagacctctgctactgcttagaatgtgtagctgaataccacaaagcaagagat
gaattgccattcttgcataaggtcttatgggaattagaaactttacgtctcataaatcac
tttgaaaaatccatgaaggcagaaattggagattatgttgacttgtatatagtagacaat
ggagaggcacagccgttggacttcactggccaagactttgaaaataaacttcgagttcct
ctactggaaatattgaaatatccttatctgcttctacatgagcgtgttaatgaattatgt
gttgaagcactttgtcaaatggaacaagccaattgctcctttcaggtttttgacaaacat
ccagggatctatttatttttggtccatcccaatgaaacggttcggcgttgggctatcctg
actgcaagaaacttaggaaaagtggacagagatgattattatgacttacaggaggtttta
acttgcctcttcaaagtcatagagttggggcttttagaaaatccagacatctatacttct
tctgttctcgaaaagggtaaactgattcttctgccttcacacatgtatgatacaaccaac
tacaaaaactattggttaggtatttgcatgttgctgaccattcttgaagagcaagccatg
gactcactgttattgggctcagacaagcaaaatgactttatgcagtcaatccttcacacc
atggagaggcaatcagatgatgatagtgtggatcctttctggccagccttacactgtttc
atggtgatcctggatcgccttggttctaaggtttggggtcaacttattgatcctattgag
gcatttcaaaccattatcaacaacgtgagctataatagggagatcaaaaatatacggaac
agctctataaggaccaagttagaaccggagtcatatttggatgatatggtgacttgcagc
cagattgtatacaattataatcccgaaaaggccaaaaaggattcagggtggagatcagcc
atttgtccagattattgtcctaatatgtatgaagaaatggaaacattagccaatgtactt
cagtcagacattggtcaagacatgcgtgtccataacagcacatttctgtggttcatacct
tttgttcagtccctcatggatcttaaggacttgggtgtggcttacatagtagaggttatt
catcatctgtactctgaagttaaagatgtcctcaaccaaacagatgctgtatgtgacaaa
gtcactgaattttttcttctaattttggtgtcagtaattgaactgcacagaaataaaaag
tgtttgcatttgctgtgggttagctcccagcagtgggtggaagctgttgtaaaatgtgcc
aagctccctaccactgcatttgcacggagtacagagaaatcatctggaaattgctccaaa
ggaacagcaatgatatcatcactgtcattgcattcaatgccatctaactctgtacagctt
gcttgtgtgcagctgatcaggagtctcctgaaagaagggtaccagctcgggcaacagact
ctttgtaagcggttctgggataagcttaacttattccttcgaggaaatttgtctctaggt
tggcagttgactagtcaggagacccatgaattacaaacgtgtttaaaacaaattattaga
aatataaaagtcaaagtacctcagtgtagcacttttgtggatctgactccatgtaagacc
ccacctacatcttttaaagaagaaagtgaacagatagacaagtctaagaaagacatgctt
tgtcttgaaaattctagcccaacattttctaaagaaccaatgaaaattgacacacatcaa
gtgcaagagagcataatgattaaagcaagtagtactgtggaagaagatggtaatgagcag
aattacatgaaggacttgaatgtggaagaccatccctcagctgagtcacacttacagcag
tgtagtaaaagcctgtttgctgaaagagctccaaaccaaggtaaagcgagcagaggggta
cagaagtctgtgaaggaaagctctcatatgccccagagctgtccttcaagaagtggtcca
gacaagggctgtggccggggaatcatcaaatcaacacgttcactgactgattcctgcact
gattgtctggcaaaagtaaccacatcaagtgaggatttctctttaaaggatgatgttctt
ggtaaaacctcaaaaccaaaatctaaggcacagaaagatgaaatctgtgcaaagttatca
catgttataaagaagcaacacagaaaaagtacttcgatcagtgatgctatcagtttaggg
gaaaatctgactgcatctaatatggagactttctatttaagaaaagatgcaggagttcag
aaaggggatggcttcacacatgatccatctttaaaccctaatggtattccagatggtgaa
aatggagaacaaaaatctcaaaacagtttatcactgaaaaagaaacacttaaagagcgaa
gagttggatatgttctcttataaaaataattgcaaagtacaggattgttatgctgatgat
aaagatttggtttcatttacagaaattaccaatactttggtgaagaaaacatctcccttt
aaagatcctgtgactatactgaaatcaagaaataaggatgtgaataagagtgtgggtctg
atttcctctaacttggtaagagagcaggcccctggcatcagtcctaagtctgatacctta
acagattctcaagtggatagagacctccacaaattgtctttaatagctcaagccagtgtt
attaagtttccatcagattcaactctaaaaagtacatcccagctgcagagaagagtaaag
gatgataaaaggtgtttcacagctaaccaaaataatgttgtggatacctgccatggacag
attattgttatttcagattctgatgatgatgatgagacaattcttgggtttgaaaaacac
attgaacagggcaaagtatctattgagaaagaatctctggcacagcatgattcaatagtt
actactactgtggaaaagaaacttataaaggaagaaaagacaaactcccttttgcacttt
gaggaatctgattctcagttttttgagtttgaaagtccatctgaagtgttttcagtttgg
gaagatcataaagtggacaagaattcagttcaagagactgaaaaaagttcctgtgtgact
catgtagccgacagcaccaataattggggctatggtacagagtatgcatctgaagaggcg
gtgtgcagggtcgtggagagtgtcgaggagcacccagagcctcacagcagcagtgcttcc
ctggaggatcttcgtgaaatccaagttaaaaagcctaagaggaaacgatttgaaaaacct
gtgtctgaagatcctctcaggccttcatcttctgtccaaaatgaggaccattctgatgtt
cttaatgagagagagcttactgaaaatgacttacagaatacagacgtgaggactgtaact
cccagttcaagtgttcagagggccacggcggtttcagtaaaaaagtctccaaagcttcgg
acttactcaaaacccattaggagagtcccagtttctaaaactaagaaaacacattcagat
cccaaaaaagggcagaataagagttcacattacctaagttgtaggacgactcctgctgta
gttccaccaaagaaatttcgccagtgtcctgaaccaacttccacagttgagaagcttggt
ttgaagaaagctcctcggaaggcctttgagttgtcccagcgatctttagaatatttagtt
cagttacgcgatcatggcaaaactgtcggagtagtagacacccaaaaaaagaccaagtta
atttctcctcagactctttctgttaaaaataataagaaactgctgacaagtcaggatctt
cattcaccaaagcaggcacgacctaagtcacaacaaaacagacaagaactttttggttac
ggaagtgcagatgctccaagggcagggacacgtagaacacataattctgacatacttgca
cctgagtctgagaggtcagattataaaagcagtgatgcacttgccagcggtgatgaaaag
cagttaagaaaagactttccttcagaaccagagaccaaaacagcaaagtacacatctcag
gtaactgagggtgcttgtgttttgaaccagtgtgattctggagggttgaatggaagactg
ccagccaacgaaggagtggtctctactttagaaacccctttaactggaggtgatcttgca
gcacaccgtgttgcagtgcacacagagatagcagctctgaaagaagtggatcctgagtcc
aacagcgatgcagaggatgacaacttatttttaacacagcatgatcccgaagatatggat
ttatgttcacaaatggagtatggtaatgataagctcattgaattggttcatggaaaagat
acagttcaggtagaagaaaattctgtgagtcggcctcagttggaatctttgagtgttaca
aagtgtaaattcaaagatggtatcgaaaccacgaaaagccagggcgaatgctgctcagga
ccctctgaaatcaaagcagatgaagatgtgtttcggaagcctggcttgcctctttctgca
gccaaacctttaagaccttctaccaccaaggtttttagttcaaagagtacttcacgcatt
gccaatctttccaagtctttggaaaatacttcacttccatcagctctaaaaaataaatca
aatggggtacagtctattctgaaagtaccacagcctgcttccctggtacctcagaagcca
gcaggtgatgggaatagtttgtgcaatgtgcttcattctcaggctccaaataattccagc
aagcaaggctacaagcttccatttggtgaaagcaaatctttttcagtttcttctccagta
aatattctcttgtcatcacagtctatctccgacacctttgttaaagaggtcttaaaatgg
aaatatgaaatgtttttgaactttgatcagtgtgggcccccagcaagtctttgtcagtcc
atctcaagacctgtgcctgtccgatttcaggattgtggagagtattttaatgttttttta
cctttgatgatattgaatacttttgaaacagtggcacaggaatggatcagctctccaaat
aaagaaaatttctatcagttgcatttacgaaaatttccagctgattataagaaaaactgg
gaatttgtggtttatctggaagaatgtgaactggctaaacagcttcatccaaaggaaaat
gatttggtgtttttggttcctgagagactaaatggagagaaaaaagatacagagagaaac
cgcttgtacgatctccaggaatatcactgtggttatgtccataaattccgccgcacttcc
gttgtgcgtaatgggaaatcggagtgttccctttgcatccagactcaagataacctgcca
gccaatctgaatgaccttatgaaatgcattataatcagttctctggtaactacacaaagg
aagttgaaagccatgtctctgctgagtggtcggaaccaactagccagagccattctgtct
ccaaaccctatggacttttgtactacagatttaccaactatgacgtctgagagaattatt
gcctacttaagagatttcaatgaagaccaaaagaaagcaatagaaactgcatatgccatg
gtgaaacagtcaccatcagttgccaaaatctgtctgatccatgggccacctggcacagga
aaatcaaaaactattgttggcctcctttaccgattattgacagagaaccagaggaagggg
cattcagatgaaaactccaatgccaaaatcaaacagaaccgtgtacttgtgtgtgcacct
tctaatgcagctgttgatgagctcatgaaaaagatcatcctcgagttcaaagaaaaatgc
aaagacaagaagaatcctttgggaaactgtggtgatattaatttagtacgactgggtcca
gaaaagtctattaacaatgaggtcctgaaattcagtctggacagccaagtcaaccacaga
atgaaaaaagacttaccttctcatgttcaggagatgcatagaagaaaagagtatctagat
catcagcttgatgagctttcacgccagcgagctctgtgccgaggaggacgggaaatacag
aggcaagaattagatgaaaaaattgctagagtttcaaaagaaaggcaagaacttgcttct
aaaattaaagaggttcaaggtcgcccacagaaaacacagagcatcatcattttggagtcc
catatcatctgctgcactctgagcacaagtggtggtttgctgctggagtctgcttttcga
gggcaggggggtgtccccttcagttgtgtaatcgtagatgaggccgggcagtcttgtgaa
gtggagactctcacaccgctcattcaccgctgcaataagctcatcctggtgggcgacccc
aagcagctccctcccacagtcatttccatgaaagcacaggagtatggctatgaccagtca
atgatggctcgcttctacaaactgctggaagagaaagtagagcagaacacgattggcaga
ctgccgattttacagctcactattcagtacaggatgcatccagatatatgtctcttccct
tctaattatgtttataacagaagtttgaaaacaaataggctgactgaaaccaaccgatgt
tcatcagactggccattccaaccttaccttgtatttgacgttggagacggttcagaaaga
cgggataatgactcatatgtaaatgttcaagaaataaaattggtgatggaaataattaaa
cttattaaagacaaaagaagagacgtcacttttcgaaacattggcataataacccattac
aaggctcagaagacaatgattcagaaggatttggacaaagagtttgatcggaaaggacca
gcagaagtggacactgtggatgccttccagggtcgtcagaaggactgtgtcattgttaca
tgtgtcagggcaaataccatgcagggctcaattggattcctggccagtttgcagagattg
aatgtcaccattacacgagccaagtacagcctcttcatcctcgggcatttgaggactctg
atggaaaaccagcattggaatcatctgattcaggatgctcagaagcgtggtgccatcatt
aaaacctgcgacaaaaactatagacatgatgcaatgaagattctgaaacttaagcctgtg
ctacagaggagtctgacgcacccacctaccatcgccccagaggtgtccagaccccaaggt
ggcttgcccagcaacaagctagacagtgaatttgccaagacatcttttgcatcttctgta
taccacacaccctctgactgcagggaagttgctgttactgtgacctcaaaggaccctgaa
aggcctcctcttcaggaccgacttcgggacccacgactgctgaggagattgggtgctgat
gccaagggaaaattcctaagagatccacagcccttgagcccccagcatcctggagcaaca
tctcccctgggagagccaggctttcccgtaactcaccaggaccttggcagtgcattgcca
ctgtctgctgctaaactgcccctgcagagcaaccacacacctcccatgccgggtgagcct
ccagctgcgagctcggatgcttccacaagtaaacgcaaatgtgatctggaagcagggctc
tgtcacaggagagagaccagggctttcagtgagggggaacaggagaagcatggctctgtc
tcatatcatacaaagaggagactggagaaagaggagagctattccaagaagaggaagctt
ttatag
DBGET
integrated database retrieval system
