Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101961652
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Entry
101961652 CDS
T10664
Symbol
Chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
iti03036
]
101961652 (Chd5)
Chromosome and associated proteins [BR:
iti03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
101961652 (Chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
101961652
NCBI-ProteinID:
XP_040143747
LinkDB
All DBs
Position
Unknown
AA seq
1961 aa
AA seq
DB search
MAGIISTIQAGKLSCLPKEMLLRLALSSKEEDGGLEGFHGFFPAEPVSLPKKKKSKKLKE
SKSKGKRKKKEGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDE
DEDDNDDGCLKEPKSSGQLMAEWGLDDVDYLFSEEDYHTLTNYKAFSQFLRPLIAKRNPK
IPMSKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVETVTIAPPLAISPQQVPQPVP
IRKAKTKEGKGPGVRKKIKGSKDGKKKGKGKKVAGLKFRFGGIGGKRKRGSSSEEDEREE
SDLDSASIHSSSVRSECSAALGKKSKRRRKKRRIDDGDGYETDHQDYCEVCQQGGEIILC
DTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDEEEEEGGCEEEEDDHMEF
CRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWT
EPPAPFTVGLPGPDVEPGVPPPKPLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVM
YRNYQRKNDMDEPPPFDYGSGDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRIL
NHSFDKKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYDNLKQAYWGHRELMLGEDARLPKR
LIKKGKKLKDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQG
TDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVV
TYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGS
IEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERF
NNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKK
YYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSS
LVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGL
RQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG
QNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTE
ELFKDDVEGMMSQGQRPVTPIPDVQPSKGGALAASAKKKHGSTPPGDNKDVEDSSVIHYD
DAAISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREVIKQEENVDPD
YWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSED
EDEDFEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMR
WGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQ
HVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLVPEGPEGKKPGEVISSDPNTPVPASPAHL
PPAPLGLPDKMETQLGFVDEKEPVVQKPKKPLDVQACPLQAPSTALDRGEGEDKHESSDN
KERAREERPEEVEKAQPSPEQLPKEEVPPEKERALDKLELGLSHSRGDGSDCRPDDPKAE
EKEPAETQQNGDREEDDEGKKEEKNGKFKFMFNIADGGFTELHTLWQNEERAAVSSGKIY
DIWHRRHDYWLLAGIVTHGYARWQDIQNDPRYMILNEPFKSEIHKGNYLEMKNKFLARRF
KLLEQALVIEEQLRRAAYLNMTQDPNHPAMALNARLAEVECLAESHQHLSKESLAGNKPA
NAVLHKVLNQLEELLSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRLTNRAGDPTIQ
QGAFGSSQMYNNNFGPNFRGPGPGGIVNYNQMPLGPYVTDI
NT seq
5886 nt
NT seq
+upstream
nt +downstream
nt
atggctggtataattagcaccatccaagcggggaagctatcctgcctccccaaggaaatg
cttttgagacttgcactttcatccaaagaagaagatggtggccttgaaggcttccacggc
ttcttccctgcggagcccgtgagccttcccaagaaaaagaaatccaagaagctcaaggag
agcaagtccaaagggaagcggaagaagaaagaggggagcaacgatgagctttcagagaat
gaggaggatctggaagagaagtcagagagcgaaggcagtgactactcccctaacaaaaag
aagaagaagaaactcaaggacaagaaggagaaaaaagccaagcggaagaagaaggacgag
gacgaggacgacaatgacgacgggtgcttaaaggagcccaagtcctcagggcagctcatg
gctgagtggggcctggacgatgtggactacctgttctcggaggaggactaccacacccta
accaactacaaggccttcagccagttcctccggccgctcattgccaagaggaacccgaag
atccccatgtccaaaatgatgacggtcctaggtgccaagtggcgggaattcagtgccaat
aacccttttaagggcagctctgcggcagcagctgcggcggctgtggccgcagccgtagag
acggttaccatcgccccgccactggccatcagccctcagcaggtgccccagccagtgccc
atccgcaaggctaagaccaaagagggcaaggggcctggagtgaggaagaagattaaaggc
tccaaagacgggaagaagaagggcaaggggaagaaggtggctgggctcaagttccgcttt
ggggggattggtggcaagcggaagaggggctcttcgagtgaggaagatgagcgggaggag
tcggacttggatagtgccagcatccacagctcctccgtgcgctctgagtgctctgcagcc
ctgggcaagaagagcaaaaggcggcgcaagaagaggaggattgacgatggtgatggctat
gagacggaccaccaggactactgcgaggtgtgccagcaggggggggagatcatcctgtgt
gacacctgcccgcgggcctaccacctcgtctgcctggaccccgagctggagaaggctccc
gagggcaagtggagctgcccgcactgcgagaaggagggcatccagtgggagcccaaggat
gacgacgaggaggaggaggagggcggctgtgaggaggaggaggacgaccacatggagttc
tgccgggtgtgcaaggacggcggcgagctgctgtgctgcgacgcctgcccctcctcctac
cacctgcactgcctcaacccgccgctgcccgagatcccaaacggtgaatggctctgcccg
cgctgtacttgtcccccactgaagggcaaagtccagcggatcctgcactggaggtggacg
gagcccccggctcccttcacggtggggctgccaggacccgatgtggagccgggagtgccc
ccccccaagcccctggagggcatccccgagagagagttctttgtcaagtgggctgggctc
tcctactggcactgctcctgggtgaaggagctacagctggagctctaccacacggtgatg
tatcgcaactaccaaagaaagaatgacatggatgagccgccaccctttgactatggctct
ggggatgaggacggcaagagcgagaagaggaagaacaaggaccctctgtacgccaagatg
gaggaacgcttttaccgctacggcatcaagcccgagtggatgatgatccatcgcatcctg
aaccacagctttgacaaaaagggggatgtccactacctgatcaagtggaaagacctgccc
tatgaccagtgcacctgggagattgatgacatcgacatcccctactatgacaacctgaag
caggcctactggggccacagggagctgatgctgggagaggacgccagactgcccaagcgg
ctgatcaagaagggcaagaagctcaaggatgataagcaggagaagccgccagacacgccc
attgtggaccccacggtcaagttcgacaagcagccatggtacatcgactccacgggtggc
acgctgcacccctaccagctggagggcctcaattggctgcgcttctcctgggcacagggc
acggacaccatcctggccgacgagatgggcctgggcaagaccgtgcagaccattgtgttc
ctgtactccctgtacaaagagggccactccaaggggccctacctggtcagcgcgcccctg
tctaccatcatcaactgggaacgtgagttcgagatgtgggcacccgacttctacgtggtc
acctacacgggggacaaggagagccgctctgtgatccgcgagaacgagttttcctttgag
gataatgccattcggagtgggaagaaagtgttccgcatgaagaaggaagtgcagatcaag
ttccacgtgctgctcacctcctacgagctcatcaccatcgaccaggccatcctgggctcc
atcgagtgggcctgcctcgtggtggacgaggcccaccggctcaagaacaaccagtccaag
ttcttcagggtcttgaacagctacaagatcgattacaagctgctgctgacggggacgccc
cttcagaacaacctggaggagctcttccatctcctcaacttcctgactccagagaggttc
aacaacctggagggtttcctggaggagtttgctgacatctccaaggaggaccagatcaag
aagctgcacgacctgctggggccccacatgctccggcggctcaaggccgacgttttcaag
aacatgccggccaagacggagctgatcgtccgcgtggagctgagccagatgcagaagaag
tactacaagttcatcctcacgcggaacttcgaggcgctgaactccaaggggggcgggaac
caggtgtccctgctcaacatcatgatggacctgaagaagtgctgcaaccacccctacctc
ttccctgtggctgcagtggaggcccccgtgttgcccaatggctcctatgatggcagttcc
ctggtgaagtcttcggggaagctcatgctgctgcagaagatgctcaagaagttgcgtgat
gaggggcaccgtgtgctgatcttctctcagatgaccaagatgctggaccttctagaagat
ttcctggagtacgagggctacaaatatgagcggattgatggtggcatcaccgggggcctc
cggcaagaagccatcgacagattcaacgcccctggggcccagcagttctgcttcctcctc
tcgacccgggcgggtggcctgggcatcaacctggccacggcagacacggtcatcatctac
gactcagactggaacccgcacaatgacatccaggccttcagccgtgcccaccgcattggc
cagaacaagaaggtaatgatctaccgcttcgtgacccgggcctctgtggaggagcgcatc
acgcaggtggccaagcgcaagatgatgctcacccacctggtggtgcgtccgggcctgggc
tccaagtcggggtccatgaccaagcaggagctggatgacatcctcaagttcggcaccgag
gagctcttcaaggacgacgtggagggtatgatgtcgcagggccagaggcctgtaacgccc
atccctgacgtgcagccctccaaagggggagccctggctgccagcgcaaagaaaaaacac
ggcagcaccccgccaggtgacaacaaggacgtggaggacagcagtgtgatccactatgat
gatgcggccatctccaagctgctggaccggaaccaggatgccaccgacgacacggagcta
cagaacatgaatgagtacctcagctccttcaaggtggcgcagtacgtggtgcgcgaagag
gatggcgtggaggaggtggagcgggaggtgatcaagcaggaggagaacgtggaccccgac
tactgggagaagctgctgcggcaccactatgagcagcagcaggaggacctggcccgcaac
ctgggcaagggcaagcgcatccgcaagcaggtcaactacaatgacgcgtcccaagaggac
caggagtggcaggatgagctctcagacaaccagtctgagtattccatcggctccgaggac
gaggatgaggacttcgaggaaagacccgaagggcagagtggacggcggcagtccaggagg
cagctgaaaagtgacagggacaagcctctgccccctcttcttgctcgagttggtggcaac
attgaggtcctgggcttcaatgcccgacagcggaaggcctttctgaacgccatcatgcgc
tggggcatgccgccccaggacgccttcaactcccactggctggtgcgagacctccgcggg
aagagtgagaaggagtttagagcctatgtgtccctcttcatgcggcacctgtgtgagccg
ggggcggacggcgcggagacctttgcggacggcgtgccccgggagggcctctccaggcag
cacgtgctcacgcgcatcggggtcatgtcactggttaggaagaaggtccaggagtttgag
cacgtcaacgggaagtacagcactccggacctggtccccgagggaccggagggcaagaag
cctggagaggtcatctcctcggaccccaacacgccggtgcccgccagccctgcccatctc
cccccagccccactgggcttgccagacaaaatggaaacacagctgggcttcgtggatgag
aaggagccagtggtgcagaagccaaagaagcccttggatgtccaggcctgtcctctccag
gccccgtcaactgccctggacagaggggagggtgaggacaagcacgagagctcagacaac
aaggagagagcccgagaggagcggccagaggaggtggagaaggcccagccctccccggag
cagctgcccaaagaggaagtgcctcctgagaaagagagagctctggacaagctggagcta
ggcttgagtcacagcagaggggacggcagcgactgcaggccagatgaccccaaagctgag
gagaaggagcccgctgagacgcagcaaaacggtgacagagaggaggacgatgaggggaag
aaggaagagaagaacgggaagttcaagttcatgttcaacattgccgacgggggcttcacg
gagctgcataccttgtggcagaatgaggaacgtgccgctgtgtcctcgggaaagatctat
gacatctggcaccggcgccatgactactggctgctggcgggcatcgtgacgcatggctat
gcccgctggcaggacatccagaatgacccgaggtacatgatcctcaacgagcccttcaag
tctgagatccacaagggcaactacctggagatgaagaacaagttcctggcccgcaggttc
aagctgctggagcaggcgctggtcatcgaggagcagctccggagggccgcgtacctcaac
atgacccaggaccccaaccacccagccatggccctcaacgcccgtctggccgaggtggag
tgccttgccgagagccaccagcacctgtccaaggagtcccttgccgggaacaagcctgcc
aacgctgtcctgcacaaggtcctgaaccagctggaggagctgctgagtgacatgaaggca
gatgtgacgcgcctgccctccatgttgtcacgcatccccccggtggctgcccgcttgcag
atgtcggagcgcagcatcttgagccgcctgaccaaccgtgccggggaccccaccatccag
cagggcgcttttggctcctcccagatgtacaacaacaactttgggcccaacttccggggc
cctggaccgggagggattgtcaactacaaccagatgcccctagggccctatgtgactgat
atctag
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integrated database retrieval system
