Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101961783
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Entry
101961783 CDS
T10664
Symbol
Rc3h1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
iti03000
]
101961783 (Rc3h1)
04121 Ubiquitin system [BR:
iti04121
]
101961783 (Rc3h1)
Transcription factors [BR:
iti03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
101961783 (Rc3h1)
Ubiquitin system [BR:
iti04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101961783 (Rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
101961783
NCBI-ProteinID:
XP_005319841
UniProt:
I3MQT0
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILPEE
GAVDLPSRKPPALPNGIVPAGNTVTQLIPRGTDPSYDSSLKPGKIDHLSSSAPGSPPDLL
ESVPKSISALPVNPHPVPPRGPADLPPMPVTKPLQMVPRGSQLYPAQADVYYQDPRGAAP
PFEPAPYQQGMYYTPPPCVSRFVRPPPSAPEPGPPYLDPYPPYLQDRVMNSQYSAQPQQY
PPMYPPHYDGRRVYPAQSYTREEIFRESPIPIEIPPAAVPSYVPESRERYQQVEGYYPVA
PHPTQIRPSYPREPPYSRLPPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPT
LPPTFHQEEFLDEELKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEMM
NVESKGMRDQRLELQRRAVETSDDDLIPFGDRPTVSRFGAISRTSKTLYQGAGPMQAMAP
QGAPTKSINISDYSPYGTHGGWGGSPYSPHQNVTSQGHFSERERVSMPEVASHGKPLPSA
EREQLRLELQQLNHQISQQTQLRGLEAVSNRLVLQRETNTLAGQPQPPPPPKWPGMISSE
QLSLELHQVEREIGKRTRELSMENQCSLDMKTKLNTSKQAENGQPEPQNKVPAEDLTLTF
SDIPNGSALTQENISLLSNKTSSLNLSEDPEGGGDNNDSQRSGVTPSSAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggatttcctctcctgcccaatttgcactcagact
ttcgacgaaacaattcgaaagcccatcagtttgggctgtggccatactgtctgtaagatg
tgcctgaacaaactccaccgcaaggcttgcccatttgaccagaccactatcaatacagac
attgagctccttcccgtgaactcagcattgctgcagctagtgggtgctcaggtccctgaa
cagcagcccattactttgtgtagtggggttgaagacacaaagcattatgaagaagccaag
aaatgtgtagaagaattagcattgtacctgaaaccgctcagcagtgctagaggagtgggt
ctgaatagcactacccagagtgttctgagtcgcccaatgcagaggaagcttgtgactctg
gttcactgccaactagtggaagaagaaggcaggattcgtgccatgagagctgctcgctct
ttaggtgaacgaacagttacagaactcattctccagcaccagaatcctcagcaactctct
tctaatctttgggcagcagtcagggctaggggctgtcagttccttggaccagcaatgcag
gaggaagctctaaagctggttctactggccttagaagatggctctgctttgtcaagaaaa
gtactggttctttttgtggtgcaaaggttggagccgcggtttcctcaagcttctaaaact
agcattgggcatgttgttcagctcctttacagagcctcctgcttcaaggtcaccaaacgt
gatgaagactcttctctgatgcagctgaaagaagaatttagaacttatgaagctctgcga
cgagagcatgactcccagatagtacagattgctatggaagcaggcttaaggattgcacca
gaccagtggtcctctttgctttatggagaccagtctcacaaatctcacatgcagtccatt
attgacaagttgcagaccccagcctcttttgctcagagtgttcaggaactaacaattgct
ctccagcggactggagacccagcaaacttgaaccgactaagaccccatttggaactatta
gcaaacattgacccaagtccagatgctcctcctcctacttgggaacagctagaaaatgga
ctggtagctgtgcgtacagttgtacatgggctggttgattatatacagaaccatagcaaa
aaaggaacagatcaacagcagcctccacagcatagcaaatataaaacatacatgtgtcga
gatatgaagcaaagaggaggatgccctcgtggtgccagctgtacatttgcacactcacaa
gaggaactggaaaaatttcgtaaaatgaacaaacgtctagttcccagaagacctctgagt
gcctctttgggtcagttgaatgaggtgggcctgccttctgcagccatccttccagaagaa
ggtgcagtggatctacctagcagaaaaccccctgctctaccaaatggaattgtgccagca
ggaaatacagtaacacaactgattccacgggggacagatcccagctatgattctagtctg
aaaccagggaaaatagatcatctgagcagtagtgctccaggatcccctcctgacctgcta
gaatctgtccctaagagtatttctgccttacctgtgaatccacatcctgtacctccaagg
gggccggcagatctgcctcccatgcctgtcaccaaaccacttcagatggtaccacgaggt
tctcagttatatccagcacaagcagatgtttattatcaggatcctcgaggagctgcccca
ccatttgaaccagcaccttatcagcagggtatgtactataccccaccaccatgtgtatcc
cgctttgttcgacctccaccatctgctcctgaacctggtcctccctacttggatccttat
ccaccctacctccaagatcgtgttatgaactctcagtacagcgcacagccacaacagtac
ccacctatgtacccacctcactatgatggccgtcgagtgtaccctgctcagtcttataca
agagaggaaattttccgagaaagccctatacccattgagattccacctgctgcagtacca
tcatatgtaccagagtccagagaaagataccagcaagtggagggttactatccagtagcc
cctcatcctactcagatcagaccttcgtatcccagagagcctccatatagccggcttcct
cctcctcccccccagccccatcctagtctagatgaactacatcgccgacgaaaggaaatt
atggctcaactggaggaaagaaaggttatctctccacctccttttgcaccttcaccaaca
ttgcctcccacattccatcaagaggaatttttggatgaagaattgaaggtagctgggaaa
tacaaaggaaatgattatagccaatactctccttggtcatgtgacaccatcggctcctac
attggaaccaaagatgcaaaacccaaagatgttgtggcagcagggagtgtggaaatgatg
aatgtggaaagtaaaggaatgagagaccagcgattggaacttcagagaagagcagtagaa
accagtgatgatgacctcatcccatttggagaccgaccaacagtatctcggtttggtgcc
atctctcgaacttccaaaacgctatatcagggtgctggcccaatgcaggctatggcacct
cagggagctcccacaaaatctattaacatttctgattacagtccatatggaacccacggt
ggctggggaggttctccatattcacctcatcaaaatgtaacttctcagggacacttcagt
gagagggagcgagtatccatgccagaagtagccagtcatggaaaaccccttccatctgct
gagagagaacaactacgactagaattgcagcaactgaaccatcagattagccagcagact
cagctacgcggattagaggcggttagtaacaggctggtgttgcagagggaaacaaacacc
ttggccggacagccacagccgccgcctcctccaaagtggcctggaatgatctcaagtgag
cagttgagcttggaactgcatcaagtggaaagggaaattgggaagagaacccgggaacta
agtatggagaaccagtgttctctggacatgaaaaccaaattgaatacaagtaagcaagca
gaaaatggacaaccagaaccacaaaacaaggttccagctgaggaccttacattgacattc
agtgatataccgaatggatcagccttgacacaagagaatatcagcctcctgtcaaacaag
accagctctctgaacctatcagaggacccagagggaggaggagataacaatgactcccag
agatccggagttactcccagttctgctccctaa
DBGET
integrated database retrieval system
