Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101961818
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Entry
101961818 CDS
T10664
Symbol
Col2a1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04151
PI3K-Akt signaling pathway
iti04510
Focal adhesion
iti04512
ECM-receptor interaction
iti04518
Integrin signaling
iti04974
Protein digestion and absorption
iti05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101961818 (Col2a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101961818 (Col2a1)
04518 Integrin signaling
101961818 (Col2a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101961818 (Col2a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101961818 (Col2a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
101961818 (Col2a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
iti00536
]
101961818 (Col2a1)
Glycosaminoglycan binding proteins [BR:
iti00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101961818 (Col2a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
101961818
NCBI-ProteinID:
XP_005324925
UniProt:
I3LZF7
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MIRLGAPQTLVLLTLLVAAVLRCQGQDLQEAGSCLQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDVKDCLSPEIPFGECCPICPADLATTSGKPGPKGQKGEPGDIKDITGPRG
PPGPQGPAGEQGPRGDRGDKGEKGPPGPRGRDGEPGTPGNPGPPGPPGPPGPSGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGLPGKPGDDGEAGKPGKSGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGELGPAGPQG
APGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGIPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGEQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGARG
LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGISGPKGDRGDVGEKGPEGAPG
KDGVRGMTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGVRGDIGPPGRAGDPGLQGPAGPPGEKGEPG
DDGPAGVDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG
PTGKQGDRGEAGAQGPMGPSGPAGARGIPGPQGPRGDKGESGEPGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADQAAGTLRQHDAEVDATLK
SLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPANVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDETAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTK
HTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagacgctggtactgctgacgctgctcgttgccgctgtc
cttcggtgtcagggccaggatctccaggaggctggcagctgtttgcaggatgggcagagg
tataatgataaggatgtatggaagcctgagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgatgacataatctgtgaagacgtgaaagactgcctcagccctgagatc
cccttcggagagtgctgccccatctgcccagctgacctcgccactaccagtggaaaacca
ggaccaaagggacagaaaggagaaccaggagacatcaaggatatcacaggacccagagga
cctcctgggccccagggacctgcaggagaacaaggacccagaggtgatcgtggtgacaaa
ggtgaaaaaggtcctcctggacctcgtggcagagatggagaacctggaacccctggtaat
cctggcccccctggtcctcctggccctcccggtccctctggcctcggtggaaactttgct
gcccagatggctggaggatttgatgagaaggctggtggtgcccagatgggagtaatgcaa
ggaccaatgggccccatgggacctcgaggacctccaggtcctgctggtgctcctggtcct
caaggatttcaaggcaaccctggtgaacctggtgaacctggcgtctctggtcccatgggt
ccccgtggtcctcctggcctccctgggaaacctggtgatgatggcgaagctggaaaacct
ggaaaatctggtgaaagaggtcttcctggccctcagggtgctcgaggcttcccaggaact
ccaggccttcctggtgtcaaaggtcacagaggttacccaggcctggatggtgctaaggga
gaagctggtgctccgggtgtaaagggtgagagtggttcccctggcgagaatggttctcca
ggtccaatgggtccccgcggcctgcctggtgagagaggacgaactggccctgctggtgct
gcaggtgcccggggcaatgatggccagccaggtcccgctgggcctccgggtcccgttggt
cctgctggtggtcctggattccctggtgctcctggtgccaagggtgaggccggcccaacc
ggtgcccgtggtcctgaaggtgctcaaggccctcgaggtgaacctggtactcctgggtcc
cctgggcctgctggtgcttccggtaaccctggaactgatggcattcctggagccaaagga
tctgctggtgctcctgggattgctggtgctcctggcttccctggaccccgtggtcctcct
ggccctcaaggtgcaactggtcctcttggtccaaaaggtcagacgggtgagcctggtatt
gctggcttcaaaggtgaacaaggccccaagggagaacttggtcccgctggccctcaggga
gcccctggtcctgctggtgaagaaggcaaaagaggtgcccgtggagagcctggtggtgct
gggcccattggtccccccggagaaagaggtgctcctggcaaccgtggtttcccaggtcag
gatggtctagcaggtcccaagggagcccctggagagcgagggcccagtggccttgctggt
cccaagggagccaacggtgaccctggccgtcctggagaacctggtctccctggagctcgg
ggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggtccttcaggaatc
cctggtgaagatggccgtcctggacctccaggtcctcagggggcccgtggacagcctggt
gtcatgggtttccctggccccaaaggtgccaatggtgagcctggcaaagctggtgagaag
ggtctgcctggtgctcctggtctaagaggtcttcctggcaaagatggtgagacaggcgct
gcaggaccccctggccctgctggacctgctggtgaacgaggcgagcagggtgctcctggg
ccatctggtttccagggacttcctggccctcctggtcccccaggtgaaggtggaaaacca
ggagagcagggtattcctggtgaagctggagcccccggccttgtgggtcccaggggtgaa
cgaggtttcccaggtgaacgtggctctcccggtgcccagggactccagggtgcccgtggc
ctccctggcactcctggcactgatggtcccaaaggtgcatctggcccagctggcccccct
ggggctcagggccctccaggtctacagggaatgcctggtgagaggggagcagctggtatt
tctgggcccaagggagacaggggtgatgttggtgagaaaggtcccgagggagcccctgga
aaggacggtgtacgaggtatgactggtcccattggcccccctggcccggctggtgcaaat
ggtgagaagggagaagttggccctcctggccctgcaggaagtgctggtgctcgaggtgcc
ccgggtgaacgtggagagactgggccccctggacctgctggattcgctggacctcctggt
gctgatggccaaccaggtgccaagggtgagcaaggagaggctggacagaaaggcgatgct
ggtgcccctggtccccagggaccctctggagctcctgggcctcagggtcctactggagtg
actggtcctaaaggagcccgaggtgcccaaggtcccccgggagccactggattccctgga
gctgctggccgtgttggacccccaggctccaatggcaatcctggaccccctggtccccct
ggtccttctggaaaagatggtcccaaaggtgttcgaggagacattggtccacctggcaga
gctggtgatcctggcctccaaggtcctgcaggaccccctggcgagaagggagagcccggc
gatgatggtcctgctggtgtcgacggtcctccaggtccccagggtctggctggtcagagg
ggcatcgttggtctacctggacagcgtggtgagagaggattccctggcctgcctggccca
tcgggtgagcccggcaagcagggtgcgcctggtgcatctggagatcgaggtcctcctggt
cctgtggggcctcctggcctgactggtcctgcaggtgaacctggacgggagggaagccca
ggtgctgatggtccacctggtagagatggtgcagctggagtcaagggtgatcgtggtgag
actggtgccgtgggtgctcccggagcacctggaccccctggttctcctggcccagctggc
ccaactggcaagcagggagacagaggagaagctggtgcacaaggccccatgggaccttca
ggaccggctggagcccggggaatcccaggccctcaaggtccccgaggtgacaaaggagaa
tctggagagcctggcgagaggggattgaagggacaccgtggcttcactggtctgcaaggc
cttcccggtcctcctggtccttctggagaccaaggtgcttctggtcctgctggtccttct
ggccctagaggtccacctggccctgttggtccctctggcaaagacggtgctaacggaatc
cctggccccattgggcctcctggtccccgtggacgttcaggcgaaactggtcctgctggt
cctcctggaaatcctggaccccctggccctccaggtccccctggccctggcatcgacatg
tctgcctttgctggcctaggccagagagagaagggccctgaccccctgcagtacatgcgg
gctgaccaggcagctggaaccttaagacagcatgatgccgaggtggatgccacactcaag
tccctcaacaaccagattgagagcatccgcagccccgagggttcccgcaagaaccctgct
cgtacctgccgggacctgaaactctgccaccctgaatggaagagcggagactactggatt
gaccccaatcagggctgcaccttggacgccatgaaggtgttctgcaacatggagacaggc
gagacctgcgtctaccccaacccagcaaacgtacccaagaagaactggtggagcagcaag
agcaaggacaagaagcacatctggtttggagaaaccatcaatggtggcttccatttcagc
tatggagatgacaacctggctcccaacaccgccaacgtccagatgactttcctacgtctc
ctgtcaactgagggctcccagaacatcacctaccactgtaagaacagcatcgcctacctg
gacgaaacagctggcaacctcaagaaggccttgctcatccagggctccaatgatgtggag
atccgggctgagggcaacagcaggttcacgtacactgccctgaaggatggctgcacgaaa
cacaccggtaagtggggcaagactgtcatcgagtaccggtcacagaagacttcacgcctc
cccatcattgacattgcacccatggacataggagggcctgaacaagaatttggtgtggac
atagggcctgtctgcttcttgtaa
DBGET
integrated database retrieval system
